seb-mueller

Founder of Alva Genomics (bioinformatics consultancy)

Alva Genomics

Pinned Repositories

Arabidopsis_smallRNA_loci
Additional material for small RNA loci project
Language:R0 2 00
ChIP-Seq_Anidulans
Code for analysis of Aspergillus nidulans H3, H3K9ac and K3K14ac ChIP-Seq libraries
Language:R1 2 01
chlamy_locus_map
Small RNA Locus Map for Chlamydomonas reinhardtii
Language:R1 3 150
dropSeqPipe
A SingleCell RNASeq pre-processing pipeline built on snakemake
Language:R0 2 00
pooling-nextseq-fastq
Pooling Illumina NextSeq 500 fastq files
Language:Shell1 2 00
scripts_tribe
Interspecific hybridization in tomato influences endogenous viral sRNAs and alters gene expression
Language:R1 2 00
simulate-rnaseq-reads
Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)
Language:Python3 2 01
snakemake-bisulfite
Pipeline for BS-Seq data based on snakemake
Language:Python6 2 00

seb-mueller's Repositories

seb-mueller/snakemake-bisulfite
Pipeline for BS-Seq data based on snakemake
Language:Python6 2 00
seb-mueller/simulate-rnaseq-reads
Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)
Language:Python3 2 01
seb-mueller/ChIP-Seq_Anidulans
Code for analysis of Aspergillus nidulans H3, H3K9ac and K3K14ac ChIP-Seq libraries
Language:R1 2 01
seb-mueller/chlamy_locus_map
Small RNA Locus Map for Chlamydomonas reinhardtii
Language:R1 3 150
seb-mueller/scripts_tribe
Interspecific hybridization in tomato influences endogenous viral sRNAs and alters gene expression
Language:R1 2 00
seb-mueller/Arabidopsis_smallRNA_loci
Additional material for small RNA loci project
Language:R0 2 00
seb-mueller/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 1 00
seb-mueller/blog
technical blog based using github pages
0 2 00
seb-mueller/dropSeqPipe
A SingleCell RNASeq pre-processing pipeline built on snakemake
Language:R0 2 00
seb-mueller/FastFold
Speed up Vim by updating folds only when called-for.
Language:Vim Script1 0
seb-mueller/JumpToVerticalOccurrence
Like f{char}, but searching the same screen column, not line.
Language:Vim script2 0
seb-mueller/kwbdi.vim
Keep Window on Buffer Delete - Improved
Language:Vim script2 0
seb-mueller/memes
An R interface to the MEME Suite
Language:R0 0
seb-mueller/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python1 0
seb-mueller/netlify-source
Hugo sources for netlify deployment
Language:HTML2 1
seb-mueller/nvim-send-to-term
Neovim plugin for REPL integration
seb-mueller/protr
🧬 Toolkit for generating various numerical features of protein sequences
Language:R0 0
seb-mueller/python-basic
Python3 teaching materials for basic introduction to Python (2 days)
Language:Jupyter Notebook2 0
seb-mueller/R-code-misc-seb
Miscellaneous R functions and code chunks
Language:R2 0
seb-mueller/roc
protocols
2 0
seb-mueller/sceasy
A package to help convert different single-cell data formats to each other
Language:R1 0
seb-mueller/scRNA.seq.course
Analysis of single cell RNA-seq data course
Language:TeX2 0
seb-mueller/Seurat.utils
Various utility functions for Seurat single-cell analysis
Language:R0 0
seb-mueller/singularity_dropSeqPipe
Singularity container for dropSeqPipe
2 0
seb-mueller/singularity_srna_phasing
sRNA phasing software singularity container
2 0
seb-mueller/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:HTML1 0
seb-mueller/snakemake_sRNAseq
Snakemake workflow for processing small RNA-seq libaries
Language:Python2 0
seb-mueller/supervision_bioinformatics_partII_compsci
supervision worksheets for bioinformatics module (part II Computer Science, University of Cambridge)
Language:TeX2 02
seb-mueller/vim-fq
First vim plugin to play around using fastq files as playground
Language:Vim script2 0
seb-mueller/vim-matchup
vim match-up: even better % :facepunch: navigate and highlight matching words :facepunch: modern matchit and matchparen replacement
Language:Vim Script1 0