reference-genome
There are 20 repositories under reference-genome topic.
Hoohm/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
refgenie/refgenie
Reference genome resource manager
Genomicsplc/variantkey
Numerical Encoding for Human Genetic Variants
refgenie/refgenieserver
Serves a web interface and RESTful API for reference genome assets.
grev-uv/hpg-methyl
An ultrafast and highly sensitive Next-Generation Sequencing (NGS) read mapper and methylation extractor.
standage/genhub
Explore eukaryotic genome composition and organization with iLoci
tseemann/polyfix
🔪⛓️ Repair nanopore assemblies using related genome(s)
bio-ontology-research-group/KSA001
Telomere-2-Telomere Genome from Saudi Arabia
EmilieT/mutcraft
R tools to mine & craft somatic mutations from cancer genomes
refgenie/refgenconf
A Python object for standardized reference genome assets.
visheshsinha/DNA-Sequencing
Get Started with DNA Sequencing working with .FastQ and .FastA file formats and performing Pattern Matching Algorithms (Exact & Approximate).
AnimalGenomicsETH/Reference_assembly_choice
Repository including scripts and workflows for "Investigating the impact of reference assembly choice on genomic analyses in a cattle breed"
jmpolinski/Jonah-Crab-Genome
Jonah Crab, once considered bycatch in the lobster industry, are now one of the most valuable fisheries in Massachusetts. A chromosome-level reference genome was generated to enable lcWGS population structure assessment
shumengjun/TASSEL_GBS_V2
Calling SNPs using TASSEL GBS V2 pipeline for ponderosa pine using the reference genome of loblolly pine
GiatrasKon/Chromosome11-VariantCalling-GATK
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
kerrimalone/M.bovis-AF2122-genome-update
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
leahkemp/guinea_pore_c
Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.
superphy/prairiedog_go
probability emitting pangenome graphs
Sydney-Informatics-Hub/IndexReferenceFasta-nf
Create required reference genome index files for WGS data analysis