fine-mapping
There are 26 repositories under fine-mapping topic.
omerwe/polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
mmkim1210/GeneticsMakie.jl
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
sankaranlab/SCAVENGE
SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
variani/finemapr
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
WansonChoi/HATK
A collection of modules to process and analyze IMGT-HLA sequences.
RajLabMSSM/ggLocusZoom
Create LocusZoom-style plots in R.
mancusolab/sushie
Software to perform multi-ancestry SNP fine-mapping on molecular data
Jianhua-Wang/easyfinemap
user-friendly pipeline for GWAS fine-mapping
naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
czheluo/MBSA
Multple methods for BSA Pipeline
GangLiTarheel/DeepGWAS
DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network
RajLabMSSM/echoplot
echoverse module: Locus plot creation for fine-mapping and colocalization studies.
RajLabMSSM/Fine_Mapping_Shiny
Shiny app for plotting and sharing fine-mapping results from echolocatoR
wugene/RADAR_SNP
Find risk snp in the LD region of GWAS snps by convolutional neural network
GeneMAP-Research/genemapgwas
gwas workflow from raw intensity data to in-silico functional mapping
jennasimit/flashfm
Flashfm: multi-trait fine-mapping that uses GWAS summary statistics from several traits. Updated and more flexible wrapper functions available at jennasimit.github.io/flashfmZero/
jennasimit/MGflashfm
MGflashfm: joint fine-mapping of genetic association signals in several traits amongst multiple population groups.
gymrek-lab/happler
A haplotype-based fine-mapping method
Pintaius/LDmergeFM
Generating a weighed average of LDSTORE matrices for locus-based fine-mapping.
RajLabMSSM/echoannot
echoverse module: Annotate fine-mapping results
jennasimit/flashfmZero
Latent factor GWAS; Multi-trait fine-mapping for any number of uncorrelated traits (and limited number of correlated traits)
cmomo/LocNet
This method incorporates dense linkage disequilibrium block structure of SNPs for prioritizing a set of genetic variants using GWAS summary statisticis before performing fine-mapping.
gil2rok/fine-mapping
Knowles Lab Research: determine which genetic variants cause a phenotype with non-binary functional annotations
jennasimit/flashfm-ivis
flashfm-ivis: interactive visualisation for fine-mapping of multiple quantitative traits
RajLabMSSM/echodata
echoverse module: Example data.