gymrek-lab/happler

Issues

• consider pruning children of the root

  #25 opened 9 months ago by aryarm
  0

• refactor happler to pass a variant mask down to each node

  #44 opened 10 months ago by aryarm
  0

• refactor for FINEMAP and SuSiE execution

  #31 opened 2 years ago by aryarm
  0

• support for STRs in the Genotypes class

  #6 opened 2 years ago by aryarm
  3

• rank alleles by their t scores instead of their pvalues

  #37 opened 2 years ago by aryarm
  1

• allow for filtering by AAF in Genotypes class

  #5 opened 2 years ago by aryarm
  0

• support for PLINK2-type file formats

  #1 opened 2 years ago by aryarm
  1

• rerun simulations multiple times and combine results to create simulation scores

  #32 opened 3 years ago by aryarm
  0

• implement parameter testing in the simulation framework

  #33 opened 3 years ago by aryarm
  0

• not responding to ctrl+c

  #30 opened 3 years ago by aryarm
  0

• use a static type checker

  #17 opened 3 years ago by aryarm
  0

• use poetry v1.2+

  #10 opened 3 years ago by aryarm
  1

• fix alleles in haplotype output file

  #22 opened 3 years ago by aryarm
  1

• create a method for converting the tree to ascii

  #12 opened 3 years ago by aryarm
  1

• come up with a better way of encoding alleles in the tree

  #23 opened 3 years ago by aryarm
  3

• pre-sort haplotypes in Haplotype.node_indices

  #24 opened 3 years ago by aryarm
  0

• an output file format

  #9 opened 3 years ago by aryarm
  4

• type-hinting numpy mixed array records

  #16 opened 3 years ago by aryarm
  0

• create a TreeBuilder class

  #8 opened 3 years ago by aryarm
  0

• add a `--range` parameter to the cli

  #3 opened 3 years ago by aryarm
  1