Gymrek Lab at UC San Diego

Code and docs produced by members of the Gymrek Lab at the University of California, San Diego.

United States of America

Pinned Repositories

.github
1 1 00
CAHMML
Custom Lambda HMM Library
Language:Python6 2 10
CITRUS
Phenotype simulation tool with flexibility to model complex interactions.
Language:Python0 1 10
core
The Gymrek Lab's core python library
Language:Python1 3 20
EnsembleTR
Tools for merging Tandem Repeat VCF files
Language:Python26 5 124
happler
A haplotype-based fine-mapping method
Language:Jupyter Notebook3 1 200
HipSTR
This is a Gymrek lab version HipSTR.
Language:C2 2 21
LongTR
Tandem repeat genotyping with long reads
Language:C++25 3 190
TRTools
Toolkit for genome-wide analysis of tandem repeats
Language:Python56 9 5622
webstr
WebSTR database and web application code
Language:JavaScript7 4 172

Gymrek Lab at UC San Diego's Repositories

gymrek-lab/TRTools
Toolkit for genome-wide analysis of tandem repeats
Language:Python56 9 5622
gymrek-lab/EnsembleTR
Tools for merging Tandem Repeat VCF files
Language:Python26 5 124
gymrek-lab/LongTR
Tandem repeat genotyping with long reads
Language:C++25 3 190
gymrek-lab/webstr
WebSTR database and web application code
Language:JavaScript7 4 172
gymrek-lab/CAHMML
Custom Lambda HMM Library
Language:Python6 2 10
gymrek-lab/happler
A haplotype-based fine-mapping method
Language:Jupyter Notebook3 1 200
gymrek-lab/HipSTR
This is a Gymrek lab version HipSTR.
Language:C2 2 21
gymrek-lab/.github
1 1 00
gymrek-lab/core
The Gymrek Lab's core python library
Language:Python1 3 20
gymrek-lab/CITRUS
Phenotype simulation tool with flexibility to model complex interactions.
Language:Python0 1 10
gymrek-lab/gymreklab.github.io
Lab website and internal lab wiki
Language:HTML0 3 622
gymrek-lab/webSTR-API
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
Language:Python00