Pinned Repositories
as_analysis
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
hmcbbq
Automate BBQ request submission to the Harvey Mudd Dining Hall
plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.
species-gene-coexp
A cross-species gene coexpression analysis in cerebral cortical tissue
studycloud.hackathon
varCA
Use an ensemble of variant callers to call variants from ATAC-seq data
flower_map
Automated flower species classification for generating honey-bee foraging maps from drone imagery
haptools
Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
happler
A haplotype-based fine-mapping method
aryarm's Repositories
aryarm/varCA
Use an ensemble of variant callers to call variants from ATAC-seq data
aryarm/as_analysis
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
aryarm/studycloud.hackathon
aryarm/hmcbbq
Automate BBQ request submission to the Harvey Mudd Dining Hall
aryarm/plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.
aryarm/species-gene-coexp
A cross-species gene coexpression analysis in cerebral cortical tissue
aryarm/stepik-cli
An (unofficial) Stepik command line interface for students
aryarm/str_ase
Allele-specific expression (ASE) for short tandem repeats (STRs)
aryarm/VarBench
Benchmarking variant callers for long read data
aryarm/flower_map
Automated flower species classification for generating honey-bee foraging maps
aryarm/aryarm
aryarm/aryarm-conda
Scripts, recipes, and docs for conda packages
aryarm/bahais-ucsd
The website of the Baha'i Club at UC San Diego
aryarm/bioconda-recipes
Conda recipes for the bioconda channel.
aryarm/conda-pack
Package conda environments for redistribution
aryarm/demo-docker-action
A demonstration of using GitHub actions to build and push reproducible, conda-based Docker containers with best practices
aryarm/motif_check
Evaluate de novo motif finding tools
aryarm/sc_rats
Analyzing single cell ATAC data from the brains of drugged rats
aryarm/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
aryarm/str_callers
Benchmarking long-read STR callers
aryarm/transit
An accumulation of transit-related project information for the SoCal region
aryarm/WASP
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery