aryarm-conda

Scripts, recipes, and docs for conda packages. Inspired by jdblischak/jdb-conda.

Build a package in this repository locally

Clone this repository

git clone https://github.com/aryarm/aryarm-conda.git
cd aryarm-conda

Verify that your ~/.condarc file contains the following:

channels:
  - conda-forge
  - bioconda
  - nodefaults
channel_priority: strict

vim ~/.condarc

Install bioconda-utils in a new environment

conda create -y -n biobuild bioconda-utils

Activate the new environment
```
conda activate biobuild
```

Build the package

bioconda-utils build --packages PACKAGE

Install the package in a new environment

conda create -y -n PACKAGE -c file://${CONDA_PREFIX}/conda-bld/ PACKAGE

Activate the new environment
```
conda activate PACKAGE
```

Build a package in this repository in GitHub Codespaces

For your convenince, you may consider doing the steps above within a GitHub codespace. This will also allow you to skip steps 1-3. You can then download the built package (located at ${CONDA_PREFIX}/conda-bld/) from the codespace through the VSCode GUI.

Build a package in this repository in GitHub Actions (recommended)

Alternatively, you can skip steps 1-5 by simply forking this repository. This is probably the easiest method because it uses GitHub Actions to do all the work. Any commits to the main branch or to a pull request will trigger a bot to automatically rebuild packages from changed recipes and publish the built packages as Github Artifacts. (You may need to enable GitHub actions for your fork first.) You can then download an artifact, unzip it, and proceed with the resulting directory of files in place of the ${CONDA_PREFIX}/conda-bld/ path in step 6.