fm-index
There are 30 repositories under fm-index topic.
lh3/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
seqan/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
femto-dev/femto
Sequence Indexing and Search
lh3/ropebwt3
BWT construction and search
xxsds/sdsl-lite
Succinct Data Structure Library 3.0
andreaferretti/cello
A string library
lh3/ropebwt2
Incremental construction of FM-index for DNA sequences
ITBE-Lab/MA
The Modular Aligner and The Modular SV Caller
TravisWheelerLab/AvxWindowFmIndex
A fast, AVX2 and ARM Neon accelerated FM index library
ikegami-yukino/shellinford-python
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
shenwei356/bwt
Burrows-Wheeler Transform and FM-index in golang
dominikkempa/faster-minuter
Wavelet tree based on a fixed block boosting technique
c0D3M/Suffix-Arrays
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
dfguan/deSPI
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
ajalab/fm-index
FM-Index for Rust
ITBE-Lab/seed-evaluation
Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
dynatrace-oss/index4j
Dynatrace FM-Index library
achacond/gem-cutter
Highly optimized genomic resources for GPUs
saishsali/cse549
Computational Biology Assignments
hewillk/aligner
Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.
aleksandarkiridzic/dna-sequence-aligner
Basic seed-and-extend DNA sequence read aligner
chusAB/bvSFMindex
bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.
jindada1/FM-index
《COMP620028 信息检索》课程作业：FM-index 实验
fjdf/SpliceTAPyR
Splice-aware Tool for Alignment of Pyrosequencing Reads
kris96tian/bioinfo_tool
Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences
maricak/GenomicIT
Repository for the master course Genomic IT at the School of Electrical Engineering
Superb-Man/Advanced_DSA
Some of my leisure activities.
rossmerr/fm-index
FM-index