genome-scale-modeling

There are 7 repositories under genome-scale-modeling topic.

draeger-lab/pymCADRE
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
Language:Jupyter Notebook12 3 45
sriram-lab/egem
epigenome scale metabolic modeling for cancer metabolism
Language:MATLAB4 1 212
cdanielmachado/kefir_paper
Supplementary Material for Blasche et al
Language:Jupyter Notebook2 2 21
iAMB-RWTH-Aachen/Opol-GSMM
Genome scale metabolic model for Ogataea polymorpha NCYC495.
Language:HTML2 3 00
sriram-lab/metabolicmodeling
Constraint-based metabolic modeling software from the Chandrasekaran Lab
Language:HTML2 1 62
OmarAshkar/GEM-Modeling-for-Dietary-Effects
MSc Thesis Code
Language:R0 1 00
sriram-lab/gemini
Integrating the transcriptional regulatory network with genome-scale metabolic models.
Language:MATLAB0 1 01