sriram-lab/egem

Issues

• Stratify CCLE cell lines to a high flux and low flux group to perform similar analyses to Shen et al.,

  #23 opened 5 years ago by ScottCampit
  0

• Create a normoxic and hypoxic metabolic model

  #25 opened 5 years ago by ScottCampit
  0

• Fix leaks in exchange and demand reactions

  #40 opened 5 years ago by ScottCampit
  1

• Fix medium conditions

  #26 opened 5 years ago by ScottCampit
  3

• - [ ] Use RECON3 as the base metabolic model for lipid reactions

  #32 opened 5 years ago by ScottCampit
  0

• Fix recon1 rxngenemat

  #39 opened 5 years ago by ScottCampit
  1

• - [ ] Add other acylation reactions

  #29 opened 5 years ago by ScottCampit
  0

• - [ ] Be able to capture new sources of lipids to the metabolic model if they are in medium components

  #30 opened 5 years ago by ScottCampit
  0

• - [ ] Add individual histone markers as individual nodes in the metabolic model

  #31 opened 5 years ago by ScottCampit
  0

• Complete end of summer checklist

  #28 opened 5 years ago by ScottCampit
  0

• Make module for seashore-ludlow analysis

  #5 opened 5 years ago by ScottCampit
  0

• Show all reactions even when performing histone only optimizations

  #24 opened 5 years ago by ScottCampit
  1

• Exploratory analysis of histone marker and metabolic gene expression

  #10 opened 5 years ago by ScottCampit
  0

• Adding individual histone writer and eraser reactions to metabolic model

  #13 opened 5 years ago by ScottCampit
  0

• Add PTM nodes into metabolic network

  #2 opened 5 years ago by ScottCampit
  0

• correlation plots between gene expression and histone markers

  #3 opened 5 years ago by ScottCampit
  0

• Histone reader, writer, and eraser expression and individual histone marker expression

  #12 opened 5 years ago by ScottCampit
  0

• FBA case in metabolic_sensitivity.m does not output correct metabolic fluxes

  #11 opened 5 years ago by ScottCampit
  1

• Issue with the SRA case in metabolic_sensitivity

  #9 opened 5 years ago by ScottCampit
  0

• Metabolic sensitivity heatmaps

  #7 opened 5 years ago by ScottCampit
  0

• metabolic_sensitivity.m dynamic range

  #1 opened 5 years ago by ScottCampit
  0