grn
There are 16 repositories under grn topic.
microsoft/vert-papers
This repository contains code and datasets related to entity/knowledge papers from the VERT (Versatile Entity Recognition & disambiguation Toolkit) project, by the Knowledge Computing group at Microsoft Research Asia (MSRA).
vanheeringen-lab/ANANSE
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
CostaLab/scMEGA
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
TuftsBCB/RegDiffusion
Diffusion model for gene regulatory network inference.
yuehhua/CDGRNs.jl
Official Implementation of Context-Dependent Gene Regulatory Networks (CDGRNs)
chenxofhit/Loc-PCA-CMI
a novel method of gene regulatory network structure inference
oubounyt/SCANet
SCANet is a python package that incorporates the inference of gene co-expression networks from single-cell gene expression data
DabinJeong/GRN_construction_with_kernelCCA
Condition-Specific Gene Regulatory Network construction
paubellot/netbenchmark
This package implements a benchmarking of several gene network inference algorithms from gene expression data
Swaraj-Deep/UAV-GRN-DRN
This is a repository for creating a UAV network based on the GRN graph using python.
jose-lopez/bio_ner_tagger
An experiment to tag ner entities related with biological molecular species using spaCy, fine-tuning a spacy's pipeline, and building a knowledge base of regulatory events, in order to model a gene regulatory network from them.
biopatternsg/bio_ner_tagger
An experiment to tag ner entities related with biological molecular species using spaCy, fine-tuning a spacy's pipeline, and building a knowledge base of regulatory events, in order to model a gene regulatory network.
biopatternsg/biopatternsg
biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.
EDS-Bioinformatics-Laboratory/GC_ABM_SHM_network
Rodrigo García-Valiente, Elena Merino, Antoine van Kampen. ABM of the germinal center with implementation of SHM fate tree, sequence representation and PC/MBC gene network.
angelfloreso/CUDA-Memetic-Algorithm
CUDA code for DE+PSO for Gene Regulatory Network inference
ccshao/scTPN
Inferring GRN from scRNA-seq data.