grn

There are 16 repositories under grn topic.

  • microsoft/vert-papers

    This repository contains code and datasets related to entity/knowledge papers from the VERT (Versatile Entity Recognition & disambiguation Toolkit) project, by the Knowledge Computing group at Microsoft Research Asia (MSRA).

    Language:Python265123692

  • vanheeringen-lab/ANANSE

    Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

    Language:Python76510715

  • CostaLab/scMEGA

    scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference

    Language:R326233

  • TuftsBCB/RegDiffusion

    Diffusion model for gene regulatory network inference.

    Language:Python51901

  • yuehhua/CDGRNs.jl

    Official Implementation of Context-Dependent Gene Regulatory Networks (CDGRNs)

    Language:Julia5310

  • chenxofhit/Loc-PCA-CMI

    a novel method of gene regulatory network structure inference

    Language:MATLAB4201

  • oubounyt/SCANet

    SCANet is a python package that incorporates the inference of gene co-expression networks from single-cell gene expression data

    Language:Python30

  • DabinJeong/GRN_construction_with_kernelCCA

    Condition-Specific Gene Regulatory Network construction

    Language:Python2101

  • paubellot/netbenchmark

    This package implements a benchmarking of several gene network inference algorithms from gene expression data

    Language:R2312

  • Swaraj-Deep/UAV-GRN-DRN

    This is a repository for creating a UAV network based on the GRN graph using python.

    Language:Python2000

  • jose-lopez/bio_ner_tagger

    An experiment to tag ner entities related with biological molecular species using spaCy, fine-tuning a spacy's pipeline, and building a knowledge base of regulatory events, in order to model a gene regulatory network from them.

    Language:Prolog10

  • biopatternsg/bio_ner_tagger

    An experiment to tag ner entities related with biological molecular species using spaCy, fine-tuning a spacy's pipeline, and building a knowledge base of regulatory events, in order to model a gene regulatory network.

    Language:Prolog00

  • biopatternsg/biopatternsg

    biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.

    0301

  • EDS-Bioinformatics-Laboratory/GC_ABM_SHM_network

    Rodrigo García-Valiente, Elena Merino, Antoine van Kampen. ABM of the germinal center with implementation of SHM fate tree, sequence representation and PC/MBC gene network.

    Language:Standard ML0101

  • angelfloreso/CUDA-Memetic-Algorithm

    CUDA code for DE+PSO for Gene Regulatory Network inference

    Language:Cuda10

  • ccshao/scTPN

    Inferring GRN from scRNA-seq data.

    Language:R10