gtf
There are 48 repositories under gtf topic.
NBISweden/AGAT
Another Gtf/Gff Analysis Toolkit
tariqdaouda/pyGeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
sagnikbanerjee15/Finder
A fully automated gene annotator from RNA-Seq expression data
sbslee/fuc
Frequently used commands in bioinformatics
dputhier/pygtftk
A python package and a set of shell commands to handle GTF files
pbenner/gonetics
Go / Golang Bioinformatics Library
tjparnell/biotoolbox
Tools for querying and analysis of genomic data
junjunlab/BioSeqUtils
Extract Sequence from Genome According to Annotation File
alejandrogzi/gtfsort
A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.
BioInterchange/Ontologies
Home of the Genomic Feature and Variation Ontology (GFVO)
alejandrogzi/gxf2bed
Fastest GTF/GFF-to-BED converter chilling around
zyxue/gtf2csv
Convert genome annotation GTF file into plain CSV format
alejandrogzi/bed2gtf
A high-performance BED-to-GTF converter written in Rust
chasewnelson/EBT
Evolutionary Bioinformatics Toolkit (EBT)
bioinformatist/py3_scripts
Life is short, *****.
deeptools/deeptools_intervals
A python library for constructing interval trees with associated exon/annotation information
guokai8/gff2gene
Plot gene structure
Bohdan-Khomtchouk/gtf
R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studies
danilotat/UTR_add_extend_GTF
Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.
igordot/reference-genomes
Reference sequences and annotation files for commonly analyzed organisms
PoisonAlien/gtf2fasta
Tookit for gtf format conversion and sequence extraction
anergictcell/atg
A Rust library and CLI tool to handle genomic transcripts
alejandrogzi/noel
GTF/GFF per gene non-overlapping exon length calculator
antonkulaga/genotations
A small library to work with ensembl and other annotations in python
dmyersturnbull/bioio
Micro-libraries for reading and writing genomic sequence data in various formats.
GreyTechno/gtci
An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.
mvinyard/GTFast
Lift annotations from a GTF file to an adata object.
nthomasCUBE/Gexplora
Gexplora - user-interface to analyse genomic elements along chromosomes
fursham-h/factR
factR: Functional Annotation of Custom-assembled Transcripts in R
jliu678/SeqWins
An R package allowing flexible base trimming and complete Fastq analysis on Windows System
Puriney/MrY
Management of References for Yourself
seandavi/RNASeqBeginnerTutorial
An introduction to RNA-seq file formats, quality control, and visualization targeted to a biologist audience
dzhang32/tuni
Unify transcripts across different samples