sagnikbanerjee15/Finder

Issues

• Distant exon prediction

  #83 opened 4 months ago by Maxim-Karpov
  2

• Finder on PacBio data

  #79 opened a year ago by WietseHR
  3

• Finder does not find files (supposed to be) generated at earlier steps...

  #80 opened a year ago by lefterov
  5

• Wrong XA format and combined/psiclass_output_vote.gtf': No such file or directory

  #82 opened 9 months ago by Dalhte
  1

• example output files

  #81 opened a year ago by dpuiu0
  1

• Unable to find combined.gtf file

  #78 opened a year ago by bimbim1803
  2

• Issue running Finder

  #46 opened 3 years ago by nousiaso
  5

• codan fails and kills pipeline due to finding duplicate key(s)

  #76 opened a year ago by laurabaxter21
  4

• error with example file

  #77 opened a year ago by theokirkland
  1

• Error during STAR alignment

  #28 opened 3 years ago by bshrestha0
  5

• metadata file and soft masking

  #60 opened 2 years ago by ardy20
  5

• Finder generates no files and fails

  #75 opened 2 years ago by ereyred
  1

• Issues during checkpoints 2/3

  #71 opened 2 years ago by Maxim-Karpov
  2

• Assembly issues, no combined gff file

  #70 opened 2 years ago by mardal42
  1

• Singularity still calling docker

  #69 opened 2 years ago by fiddlinwill
  1

• SRA Toolkit update for prefork and fastq-dump

  #68 opened 2 years ago by wesleyemason
  1

• Finder test issue

  #65 opened 2 years ago by tomh1lll
  2

• I got gm_key_64.gz from the site

  #66 opened 2 years ago by angus821
  3

• docker: Error response from daemon: Duplicate mount point:

  #61 opened 2 years ago by takeiga
  2

• avoiding docker and singularity

  #64 opened 2 years ago by deniskristak
  4

• How to install via Conda

  #59 opened 2 years ago by ardy20
  5

• CDS frame in output

  #63 opened 2 years ago by LarsGab
  2

• Singularity error: "destination must be an absolute path"

  #62 opened 2 years ago by claumer
  1

• Finder Stops Running during psi class assembly

  #58 opened 2 years ago by hopehealey
  2

• [error]docker: invalid reference format: repository name must be lowercase

  #57 opened 2 years ago by ShailNair
  2

• gz process

  #55 opened 2 years ago by wyim-pgl
  1

• really long introns create a problem with gffread

  #53 opened 2 years ago by jkreplak
  4

• Unable to run example

  #54 opened 2 years ago by kataksk
  1

• error when downloading docker image

  #52 opened 3 years ago by yz42
  1

• Not stranded annotation on the final GTF file

  #51 opened 3 years ago by vccarneiro
  1

• Are all those .sam mandatory ?

  #50 opened 3 years ago by jkreplak
  1

• Help check legit of Finder for report in University

  #49 opened 3 years ago by trungnl08
  1

• Psiclass fault

  #48 opened 3 years ago by vruggieri
  4

• Genome examples empty?

  #47 opened 3 years ago by paul-bio
  18

• Output files not always containing CDS filed

  #45 opened 3 years ago by vccarneiro
  3

• cds_predict error

  #44 opened 3 years ago by claumer
  5

• dummy_data file issue - Singularity

  #43 opened 3 years ago by njm-data
  7

• Low BUSCO stats

  #41 opened 3 years ago by skyungyong
  2

• Trouble with running the example, maybe from alignReads.py Round4 missing

  #31 opened 3 years ago by LuLiangL
  9

• Several bug I found

  #34 opened 3 years ago by ZuyaoLiu
  1

• Unable to load modules

  #40 opened 3 years ago by skyungyong
  2

• Finder failed to analy

  #37 opened 3 years ago by jb018
  10

• RNAseq file name

  #38 opened 3 years ago by vccarneiro
  9

• Why the busco scores for the annotated example arabidopsis thaliana genome proteins are very low ?

  #39 opened 3 years ago by bioinformaticspcj
  3

• Error: "finder: Argument list too long"

  #36 opened 3 years ago by vccarneiro
  12

• Will this error affect final results?

  #35 opened 3 years ago by xiekunwhy
  1

• Final output has many gene annotations in repetitive regions

  #33 opened 3 years ago by ZuyaoLiu
  9

• Final output annotation

  #32 opened 3 years ago by ZuyaoLiu
  1

• Use of Long Read (PacBio IsoSeq)

  #30 opened 3 years ago by saxovocal
  1

• Protein FASTA from closely related species

  #29 opened 3 years ago by saxovocal
  1