identity-by-descent

There are 15 repositories under identity-by-descent topic.

  • sunyatin/ASCEND

    Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

    Language:Python8301

  • magnusdv/ibdsim2

    Simulate patterns of DNA sharing between pedigree members

    Language:R55182

  • a-thind/IBDVar

    A prototype tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.

    Language:Shell4200

  • sdtemple/isweep

    Statistical inference of recent positive selection using IBD segments

    Language:Jupyter Notebook42100

  • tbrunetti/GP3

    GWAS Pre-Processing Pipeline

    Language:Python4200

  • bguo068/ishare

    a Rust crate designed to facilitate the analysis of rare-variant sharing and identity-by-descent (IBD) sharing.

    Language:Rust3390

  • jlc-christie/plink2merlin

    Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).

    Language:Python3013

  • bguo068/ibdutils

    A python package to facilitate identity-by-descent-based analysis

    Language:Python1130

  • bguo068/posseleff_simulations

    Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.

    Language:Python1110

  • gmagoon/bIBD

    efficient, accurate, and scalable IBD segment detection with unphased genotype data

    Language:TeX1200

  • magnusdv/ibdsim2-legacy

    A legacy version of the ibdsim2 app for simulating and visualising genetic sharing between pedigree members.

    Language:R130

  • nickbrazeau/discent

    Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates

    Language:R12140

  • rorycraig337/Chlamydomonas_reinhardtii_population_structure

    Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"

    Language:Perl0001

  • belowlab/compadre

    IBD-based pedigree generation software, built on top of and maximizing utility from the tools PRIMUS and ERSA

    Language:Perl11

  • hhuang2018/WGS_analysis

    Exploratory analysis for donor-recipient whole genome sequences

    Language:R20