immune-repertoire

There are 10 repositories under immune-repertoire topic.

  • immunomind/immunarch

    šŸ§¬ Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

    Language:R3111430466
  • immuneML

    uio-bmi/immuneML

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    Language:Python62131629

  • uio-bmi/compairr

    Comparison of Adaptive Immune Receptor Repertoires

    Language:C++256425

  • Qile0317/APackOfTheClones

    Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.

    Language:R141151

  • akds/BASIC

    BASIC: BCR and TCR assembly from single cell RNA-seq

    Language:Python8514
  • IgGeneUsage

    snaketron/IgGeneUsage

    Comparison of gene usage in immune repertoires under different biological conditions

    Language:R63131

  • snaketron/IgStats

    Suit of statistical procedures for robust quantification of various BCR and TCR repertoire properties

    Language:R1300

  • pughlab/immunogenomics_pedNST

    Immunogenomics of pediatric nervous system tumours

    Language:Jupyter Notebook0300

  • vadimnazarov/immunometric

    Siamese network-based metric learning for dimensionality reduction and visualization

    Language:Jupyter Notebook10

  • vadimnazarov/shade-repertoire

    Limitations of machine learning models for specificity prediction of T-cell receptor sequences

    Language:Jupyter Notebook10