immunomind/immunarch

Issues

• Exploring heavy chain isotypes from bulk data

  #416 opened 3 months ago by hookoop
  0

• Error loading files from TRUST4

  #415 opened 4 months ago by Sa753
  1

• How to deal to the BCR data of smart-seq3 from TRUST4?

  #414 opened 4 months ago by ljy-sys
  0

• RepLoad 10X data

  #374 opened a year ago by TheRaspberryFox
  3

• CDR3 length as proportion instead of clonotype number

  #413 opened 5 months ago by Hammer-Q
  0

• filtered_contig_annotations under the data object

  #412 opened 5 months ago by daldawood
  0

• Barcodes missing - AIRR file loading issue

  #411 opened 5 months ago by martuskaR
  0

• dbAnnotate problems

  #410 opened 6 months ago by giuliabriss
  0

• Novaseq X and 10X

  #409 opened 7 months ago by katyely
  0

• CDR3 Length paired 10x data

  #408 opened 8 months ago by paulrbuckley-kcl
  0

• Cellranger Data Loading

  #406 opened 8 months ago by bshim181
  1

• object 'generate_germline_sequence' not found

  #407 opened 8 months ago by royfrancis
  0

• Incorrect parsing of AIRR files

  #387 opened a year ago by DoaneAS
  1

• File naming vs loading problems

  #402 opened 9 months ago by MikolajKocikowski
  2

• MiXCR import no longer works

  #401 opened 9 months ago by MikolajKocikowski
  4

• C call with TRUST4 files

  #397 opened 10 months ago by psmith20
  2

• Get Immunarch back to CRAN

  #393 opened 9 months ago by vadimnazarov
  0

• Issue with repLoad and repGermline when using O. mykiss IMGT data

  #390 opened a year ago by bengarcia015
  2

• Single cell TCRSeq

  #396 opened 10 months ago by synatkeamsk
  1

• How to specify groups order?

  #400 opened 9 months ago by makarov-ccf
  0

• Found dataframe without required column Cluster

  #399 opened 9 months ago by liu9756
  0

• gene_stats for pig TRAV

  #398 opened 10 months ago by Ahmedalaraby20
  0

• Deprecation warning from purrr in function seqCluster

  #395 opened 10 months ago by goepp
  0

• Number of sequence provided in .data and .dist are not matching!

  #394 opened a year ago by Rmulet
  0

• Problem with importing columns that are mostly NAs

  #379 opened a year ago by christianwoe
  3

• Error when generating plot for "Gini coefficient"

  #389 opened a year ago by KashingTang
  1

• Ambiguous Gene Usage in TRBD

  #391 opened a year ago by ShaowenJ
  2

• Package Installation Error

  #392 opened a year ago by phoman14
  1

• select_()` was deprecated in dplyr 0.7.0.

  #388 opened a year ago by MuTarr
  0

• Adding a new proportions scale or consistent scale for multiple samples

  #384 opened a year ago by apal6
  2

• Loading BD Rhapsody VDJ CDR3 data

  #386 opened a year ago by yt723
  0

• Clarification on how matches are determined within trackClonotypes?

  #385 opened a year ago by jeremymsimon
  2

• Extraction of clonal count from IMGT airr output

  #382 opened a year ago by AnnaSurace
  2

• repLoad failing to load in TRUST4 data

  #383 opened a year ago by sammurray13
  1

• Any method to adjust the plots in code?

  #381 opened a year ago by mingbao96
  1

• Clarification + Documentation

  #380 opened a year ago by shreyii
  3

• Question for batch correction

  #377 opened a year ago by jyeoneeee
  1

• repLoad issue

  #376 opened a year ago by WG20231
  1

• repFilter by CDR3.nt list

  #378 opened a year ago by tdfy
  1

• Summarise / aggregate sample

  #375 opened a year ago by royfrancis
  0

• Error in `df[, make.names(df_columns)]`

  #373 opened a year ago by royfrancis
  1

• Question about deletion in nucleotide to amino acid sequence translation

  #372 opened a year ago by paulovic96
  0

• Some question about calculation of Chao1.

  #371 opened a year ago by xxl619755841
  0

• problem with TABdb annotation

  #370 opened a year ago by avrilyuki
  0

• RepLoad select() error

  #368 opened a year ago by annabellaidler
  1

• Repload not detecting my Mixcr data

  #369 opened a year ago by Ajay-097
  0

• Error loading Mixcr v4.3.2 data - [!] Warning: can't find a column with clonal counts

  #367 opened a year ago by ArteEfs
  2

• immunarch repLoad immdata<-repLoad(file_path) Error in `df[, vec_names]`:

  #363 opened 2 years ago by yueli8
  4

• Permanent error in loading 10x data

  #365 opened 2 years ago by beginner984
  2

• <simpleError in select(., .col, IMMCOL$count): <text>:1:7: unexpected symbol 1: Using an ^>

  #364 opened 2 years ago by RichardYongLi
  1