Ahmedalaraby20

Hannover Medical SchoolHannover, Germany

Pinned Repositories

MHH-bioinformatics-support-community
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TSpred
TSpred: a robust prediction framework for TCR-epitope interactions using paired chain TCR sequence data
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immunarch
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Language:R313 14 30565
mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Language:Kotlin338 31 98679
NetTCR-2.2
Sequence-based prediction of peptide-TCR interactions using paired chain data
Language:Python7 1 15
escape
Easy single cell analysis platform for enrichment
Language:R155 3 10920
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:Nextflow943 157 674713
djvdj
An R package to analyze single-cell V(D)J data
Language:R24 4 694
souporcell
Clustering scRNAseq by genotypes
Language:Python173 11 23046