immunofluorescence

There are 20 repositories under immunofluorescence topic.

  • minerva-story

    labsyspharm/minerva-story

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    Language:HTML50127014

  • ciccalab/SIMPLI

    SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

    Language:R35655

  • AstroPathJHU/AstroPathPipeline

    The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

    Language:Python18503
  • LKS-Dataset

    cradleai/LKS-Dataset

    This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.

    Language:Python16421

  • Immunodynamics-Engel-Lab/msiflow

    collection of mass spectrometry imaging workflows

    Language:Python7001

  • labsyspharm/minerva-author-ui

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    Language:JavaScript4535

  • SilMon/NucDetect

    Python interface to detect and quantify intranuclear proteins

    Language:Python3100

  • aminnaghdloo/slide-image-utils

    A package for processing immunofluorescence (IF) microscopy image data.

    Language:Python2200

  • labsyspharm/minerva-cloud

    Minerva Cloud is a novel cloud-native (AWS) platform for high-dimensional microscopy image storage, management, and visualization.

    Language:Python28274

  • duke-lungmap-team/odifmap

    A Python library for segmentation and classification of objects in microscopy images

    Language:Python1251

  • himsr-lab/CU-IScore

    IHC scoring of multi-channel images

    Language:ImageJ Macro110

  • kunlunW/UniFORM

    UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging

    Language:Jupyter Notebook1

  • labsyspharm/minerva-cloud-ui

    Minerva Cloud is a novel cloud-based (AWS) software for high-dimensional image management, storage and visualization.

    Language:JavaScript1712

  • amarcog/Immunofluorescence_2D_Quantification

    Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.

    Language:ImageJ Macro0100

  • duke-lungmap-team/lungmap-pipeline

    Complete analysis pipeline for the segmentation & classification of structures / cells for LungMap images

    Language:Python0251

  • eleni-chr/cell-morphometry

    Morphometric analysis of cells in microscopy images.

    Language:MATLAB0100

  • eleni-chr/NMJ-MN-image-analysis-toolkit

    Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.

    Language:MATLAB0100

  • SCCH-KVS/NuclearSegmentationPipeline

    Code for the paper: Deep Learning architectures for generalized immunofluorescence based nuclear image segmentation

    Language:JavaScript0101

  • SilMon/DSB-Analysis-Notebook

    A jupyter notebook about DNA double strand break analysis from fluorescence images using Python

    Language:Jupyter Notebook0000

  • d-wdj/thesis

    Language:Python10