immunogenomics

There are 7 repositories under immunogenomics topic.

  • neofox

    TRON-Bioinformatics/neofox

    Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors

    Language:Python276106

  • immunogenomics/amp_phase1_ra

    :ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

    Language:Jupyter Notebook217113
  • IgGeneUsage

    snaketron/IgGeneUsage

    Comparison of gene usage in immune repertoires under different biological conditions

    Language:R63131

  • aislyn/TCR_circos

    R function to generate a circos-style ggplot from single-cell TCR data.

    Language:R4101

  • rbowenj/disTIL

    The disTIL immunoprofiling toolkit

    Language:Common Workflow Language1201

  • fanzhanglab/amp_phase1_ra

    Code for Zhang, Wei, Slowikowski, Fonseka, Rao, et al, Nature Immunology, 2019. Single-cell transcriptomics and proteomics data analysis and integration for rheumatoid arthritis synovial tissue. These integrative strategies can be generalized to any other diseases.

    Language:Jupyter Notebook0100

  • fanzhanglab/TteK

    Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.

    Language:Jupyter Notebook0100