integrative-analysis
There are 17 repositories under integrative-analysis topic.
BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks
Bohdan-Khomtchouk/Biochat
Natural language processing of Gene Expression Omnibus data
xqwen/fastenloc
Colocalization analysis of genetic association signals
KChen-lab/bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
sqjin/scAI
An unsupervised approach for the integrative analysis of single-cell multi-omics data
corbinq/GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
shu-hai/D-CCA
A Decomposition-based Canonical Correlation Analysis for High-dimensional Datasets (JASA-20 paper)
samhinshaw/metabridge_shiny
🕸 Network-based multi-omic integration of metabolomics data.
AberystwythSystemsBiology/pyMEAN
A Python package for metabolite enrichment analysis.
inukj/MONTI
MONTI is a tool for analyzing large multi-omics cancer cohort data in association with clinical featuers
fchen365/surf
The statistical utility for RBP functions (SURF)
hancockinformatics/MetaBridgeShiny
Repository for the MetaBridge Shiny app.
ParkerLab/2021_islet-rfx6
Code for Walker, Saunders, Rai et al., (2021).
jokergoo/epik
Integrative analysis for epigenomic sequencing data
JunWangmath/GeP-HMRF
Hidden Markov Random Field Model - Inferring Gene-Disease Association by an Integrative Analysis of eQTL GWAS and Protein-Protein Interaction data
alexwky/missLASSO
Penalized regression for multiple types of many features with missing data using expectation-maximization (EM) algorithm.
sggao/sparse-gca
MATLAB and R Code for sparse GCA