introgression
There are 13 repositories under introgression topic.
jbpease/dfoil
DFOIL: Introgression Testing for Five Taxa
btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
xin-huang/sstar
Detecting Archaic Introgression from Population Genetic Data with S*
rancilhac/Introgression-tests-from-gene-trees
Script for detecting signals of introgression in large set of gene trees from unlinked markers
btmartin721/phylip2eigenstrat
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
pievos101/Introgression-Simulation
Introgression Simulation using ms and seq-gen
bjarnebartlett/Interspecific-Breeding-History-of-Hawaiian-Macadamia
Revealing the Interspecific Breeding History of Hawaiian Macadamia through Transcriptome Sequencing and AnalysisÂ
nicolo-tellini/intropipeline
Detection of Saccharomyces paradoxus DNA across Saccharomyces cerevisiae, and vice versa.
rtfcoimbra/Coimbra-et-al-2023_BMCBiol
Code used to analyse WGS data of giraffe in Coimbra et al. 2023
btmartin721/makePopMap
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
nicolo-tellini/ils-pipeline
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
SvitlanaLukicheva/FILET
A modified version of FILET (software for detecting introgression using supervised machine learning), to use for introgression detection between Gonioctena intermedia and Gonioctena quinquepunctata
zhuochenbioinfo/3KRG-HAP
Haplotype marker based on 3,000 Rice Genomes for subpopulation inference