kmer-frequency-count
There are 22 repositories under kmer-frequency-count topic.
anuradhawick/kmertools
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
nf-core/kmermaid
k-mer similarity analysis pipeline
jtnystrom/Discount
Very large scale k-mer counting and analysis on Apache Spark.
pnnl/mercat
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
slowikj/seqR
fast and comprehensive k-mer counting package
BioJulia/KmerAnalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
raw-lab/mercat2
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
suchapalaver/fastas2kmers
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
sanger-tol/sequencecomposition
Nextflow pipeline to extract statistics from a genome about its sequence composition
alexpreynolds/kmer-counter-abseil
Count canonical kmers with Abseil C++ `absl::flat_hash_map`
Selvalakshmi27/Kspectra
Generate K-mer spectra to observe modalities of distributions
ShawnMOlichwier/KmerResearch
Kmer Research in Python and R
bissim/bgp-d2
This is our implementation for D2 distance algorithm for k-mers.
rejoyc-cs/k_mer_in_DNA
Counts the number of occurrences of each k-mer in a DNA string
smhuprikar/AdapterFinder
A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
urmilkadakia/ParallelKmerEstimate
A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage in Parallel
alexpreynolds/kmer-counter-boost
Count canonical kmers with Boost C++ `boost::unordered_map` hash table
alexpreynolds/kmer-counter-emilib
Count canonical kmers with Emil Ernerfeldt's emilib::HashMap
alexpreynolds/kmer-counter-ska
Count canonical kmers with Malte Skarupke's bytell_hash_map hash table
alexpreynolds/kmer-counter-sparse
Count canonical kmers with Google sparse_hash_map
alexpreynolds/kmer-counter-unordmap
Count canonical kmers with STL unordered_map
turkdogan/kmer-counter
Counts k-kmers and sorts top "k" kmer by occurrence.