lncrna

There are 33 repositories under lncrna topic.

  • tderrien/FEELnc

    FEELnc : FlExible Extraction of LncRNA

    Language:Perl83106228

  • biocoder/Perl-for-Bioinformatics

    An attempt to help anyone interested in using Perl for Bioinformatics

    Language:Python346728

  • nf-core/lncpipe

    UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

    Language:Nextflow34191118

  • gao-lab/CPC2_standalone

    Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

    Language:Python231612

  • bioinformatist/LncPipeReporter

    An R package for automatically aggregating and summarizing lncRNA analysis results.

    Language:R16666
  • CLASS_2021

    boulderrinnlab/CLASS_2021

    Statistical and computational analysis of the human genome

    Language:R14407

  • zhangjunpeng411/LncmiRSRN

    LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network

    Language:R13305

  • Alipe2021/NLncCirSmk

    Pipeline for lncRNA, Circular RNA, and novel mRNA identification.

    Language:Python11107

  • schosio/CHOLAR

    Automated RNA-seq pipeline for lncRNA indentification

    Language:Shell9201

  • UDC-GAC/PATO

    PATO: high PerformAnce TriplexatOr is a high performance tool for the fast and efficient detection of triple helices and triplex features in nucleotide sequences

    Language:C++9420

  • pandora414/lncRNA

    lncRNA分析流程

    Language:Perl8215

  • urmi-21/PLncPRO

    A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)

    Language:Python8225

  • acesnik/LncRNADiscovery

    Snakemake pipeline for lncRNA discovery and quantification

    Language:C#5212

  • haichengyi/bioseq2vec

    BioSeq2vec: learning deep representation of biological sequences using LSTM Encoder-Decoder

    Language:Python4004

  • lim74/LncDC

    LncDC: a machine-learning based tool for long non-coding RNA detection from RNA-Seq data

    Language:Python4232

  • noncodo/BigRedButton

    Pipeline for the unsupervised clustering of homologous RNA structure motifs from sequencing data.

    Language:TeX4411

  • LieberInstitute/marchionni_projects

    Collaboration with Luigi Marchionni (JHU) and RIKEN with recount2 data

    Language:Shell3801

  • zhangjunpeng411/MSLCRN

    MSLCRN: a novel step-wise method for inferring module-specific lncRNA-mRNA causal regulatory network in human cancer

    Language:R3203

  • IGDRion/ANNEXseq

    Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data

    Language:Nextflow2170

  • pentalpha/rna_gatherer_2020

    ncRNA identification, annotation and functional prediction

    Language:Python2301

  • UDC-GAC/pRIblast

    pRIblast is a high efficient, parallel application for extensive lncRNA-RNA interaction analysis

    Language:C++2330

  • BDLab-G4/CanLncG4

    CanLncG4, an intricately curated database, presents 17,666 experimentally-validated associations between 6,408 human IncRNAs (including their transcript variants) and 15 distinct types of human cancers, while predicting their G4-forming potential. It also affords insights into the lncRNA subcellular localization and lncRNA-G4 interacting partners.

    Language:TypeScript1

  • chenchenxiong/ASDmiR

    ASDmiR: a step-wise method to uncover miRNA regulation related to autism spectrum disorder

    Language:Emacs Lisp1100

  • jonbra/jonbra.github.io

    Testing how to use Jekyll and GitHub Pages to make a webiste.

    Language:SCSS1202

  • vivek37373/lncFETCHER

    Bioinformatics pipeline for lncRNA prediction in Arabiodpsis thaliana

    Language:Shell1100

  • zhangjunpeng411/SpongeModule

    In silico methods for predicting miRNA sponge modules

    Language:MATLAB1201

  • EnrightLab/bitetti_et_al_codebase

    Supporting code for:"A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site"

    Language:HTML0200

  • matheuscburger/DengueAnalysis

    Language:R0220

  • NhanNguyen000/lncRNA_ANT

    This repository for analysing lncRNAs from RNA-seq anthracycline data (HeCaToS project)

    Language:HTML0100

  • xiaofengsong/LncMiM

    LncMiM, a tool to identify lncRNA-associated competing triplets, especially for large-scale expression data.

    Language:R0212

  • luukromeijn/lncRNA-Py

    lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicting whether a novel RNA transcript is coding (mRNA) or long non-coding (lncRNA).

    Language:Python

  • MarioniLab/LOFMethods2016

    Code for Lovorka and Aaron's lncRNA loss-of-function project.

    Language:R30

  • SherineAwad/lncRNA

    Snakemake pipeline to detect novel lncRNA

    Language:Python20