low-coverage-sequencing

There are 10 repositories under low-coverage-sequencing topic.

broadinstitute/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Language:R171 21 13289
srubinacci/imputation-ukb-ref-panel
Genotype imputation pipelines for the UK Biobank Research Analysis Platform
Language:Shell10 1 30
Zilong-Li/lcWGS-imputation-workflow
Imputation workflow for low coverage whole genome sequencing data
Language:Python9 3 00
Zilong-Li/BaseVarC
The repo was not under development. Check out angsd toolkit for low depth data analyses.
Language:C++7 3 94
MaddalenaCella/nf-lcWGS-mapping-and-imputation
Two Nextflow pipelines for mapping and imputation of non-human samples sequenced at low-coverage.
Language:Nextflow5 1 00
renatosantos98/GLIMPSE-low-coverage-WGS-imputation
Supporting data for "Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients"
Language:Python3 1 00
Green-Lab-MDACC/lpWGS_pipeline
Language:C2 0 00
marcusnizalvarez/LCVCFtools
LCVCFtools is a program designed for working with VCF files generated from low-coverage whole genome sequencing
Language:C++2 1 00
sonisarm/Technical-validation-of-imputation
Asses the validity of imputation of your low-coverage samples
Language:R2 1 00
Zilong-Li/phaseless
Imputation and Admixture for lcWGS in one goal
Language:C++2 2 00