mass-cytometry
There are 32 repositories under mass-cytometry topic.
ImmuneDynamics/Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
lmweber/cytometry-clustering-comparison
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
ParkerICI/premessa
R package for pre-processing of mass and flow cytometry data
burtonrj/CytoPy
A data-centric flow/mass cytometry automated analysis framework
LCSB-BioCore/GigaSOM.jl
Huge-scale, high-performance flow cytometry clustering in Julia
ParkerICI/panorama
R package for interactive visualization and analysis of single-cell data
ParkerICI/vite
R package for analysis of single-cell data using graphs
buettnerlab/pytometry_legacy
This repository extends scanpy to handle flow and mass cytometry data.
ParkerICI/grappolo
R package to cluster single-cell data and generate features that can be used for model building
MarioniLab/archive-cydar
An archived version of the cydar repository, see https://github.com/MarioniLab/cydar for the active version.
wwu-mmll/gatenet
Official implementation of GateNet
jfaccioni/SCOUTS
Single Cell Outlier Selector - quickly find outliers in your single-cell data
JimboMahoney/cytofclean
Fast auto-cleanup of CyTOF data
JimboMahoney/CytobankGraphs
R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank
lance-waller-lab/gateR
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
morchalabi/COMPARE-suite
Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
burkesquires/cytometry-clustering-comparison
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
dweth/mcsnac
Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets
JimboMahoney/CytoBars
R script for summarising paramater / channel intensity from flow or mass cytometry data
JimboMahoney/CyTOF-PlotViewer
Plots log histograms of FCS files like CyTOF's PlotViewer program
jeffreypullin/myCyTOF
Functions and scripts for analysing and normalising CyTOF data
JimboMahoney/Common-FCS-Channels
Opens two or more FCS files and creates new files that contain only the Channels common to all.
JimboMahoney/FCS-Multidimensional-Scaling
Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.
JimboMahoney/FCS-Non-Redundancy-Score
Plots the NRS (non-redundancy score) of selected markers from one or more FCS files
marta-seq/PENGUIN
Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
SimeonGeorgiev/msc_project
Batch effect correction and automated gating of CyTOF data
Teng-Qiu-Clustering/Clustering-by-HNND-Pattern-Recognition-2023
Hierarchical Nearest Neighbor Descent, In-Tree, and Clustering (Teng Qiu, Yongjie Li, Pattern Recognition, 2023)
deMirandaLab/PENGUIN
Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
JimboMahoney/FCS-Events
Very fast method to read number of events from some / all FCS files in a directory
JimboMahoney/FlowCytSpeed
R Script to plot the average event rate in flow or mass cytometry (FCS) files
JimboMahoney/Isotope-Abundance
A handy spreadsheet for looking up elemental isotopes by symbol or mass.
MarioniLab/DAMethods2016
Code and manuscript files for Aaron and Arianne's differential abundance methodology manuscript.