maxquant
There are 18 repositories under maxquant topic.
MannLabs/alphapeptstats
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
cbielow/PTXQC
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
tbaccata/amica
amica: an interactive and user-friendly web-based platform for the analysis of proteomics data
cox-labs/PerseusR
R package for easy interop between Perseus and R
siheming/mspypeline
Package to analyze Mass Spec Data
cox-labs/perseuspy
Integration between Perseus and Python
cox-labs/PluginInterop
Enables working with external scripts and tools from within Perseus
SamueldelaCamaraFuentes/TraianProt
Pipeline and Shiny app for the dowstream analysis of quantitative proteomic data
protViz/SRMService
Provides reports for quantitative mass spectrometry data.
pwilmart/MaxQuant_and_PAW
Compares PAW and MQ for a 7-channel TMT experiment; compares edgeR to two-sample t-test
pwilmart/Multiple_TMT_MQ
Developing mouse lens done with MQ
RasmussenLab/hela_qc_mnt_data
Functionality for processing and analysing HeLa data quality control (QC) and maintenance (MNT) samples processed by MaxQuant
SamueldelaCamaraFuentes/Downstreaming-analysis-workflow
Pipeline and shiny app for the downstreaming analysis of quantitative proteomic data
BerndHessling/MaxQuant-Incorporation-Control
R-script to check incorporation level of heavy SILAC amino acids
BerndHessling/MQ-Queue
Queue MaxQuant analysis by saving MaxQuant parameter files in a watch folder.
BerndHessling/ShinyQC
Automated Proteomics quality control package
devradiumking/maxabpp
R package that visualizes MaxQuant output of activity-based protein profiling experiments.
LabKey/MaxQuant
LabKey Server module for importing MaxQuant results, originated from the Ong lab at UW