cbielow/PTXQC

Issues

• [Feature request] Cluster mzTab-based report by assay/study variable

  #79 opened a year ago by jpfeuffer
  1

• Quitting from R template and can't generate template file

  #115 opened 3 years ago by yuha6189
  1

• QC metrics output as data frames

  #80 opened 5 years ago by wyu
  6

• [IDEA] Metric: Kendrik Mass Defect for all PSMs and unidentifed MS2

  #50 opened 6 years ago by cbielow
  0

• Error with pandoc 2.12

  #95 opened a year ago by jpfeuffer
  2

• Error pandoc

  #89 opened a year ago by DaliJarboui
  1

• [IDEA] check MS2 spectral quality

  #74 opened 5 years ago by cbielow
  0

• Contaminant recognition

  #127 opened a year ago by ofleitas
  2

• qualUniform(x$ratio, x$count)

  #129 opened a year ago by mthang
  2

• Error in `$<-.data.frame`(`*tmp*`, page, value = 1) : replacement has 1 row, data has 0 [UTF-8 BOM issue]

  #130 opened 2 years ago by GeorgTascher
  5

• Error in qualUniform(x$topN): Error: qualUniform() received negative or missing data

  #128 opened 2 years ago by eschen42
  14

• Wrong locale only reported when evidence.txt is present

  #126 opened 2 years ago by cbielow
  0

• MSMSScans TopNoverN plot shows equally high bars for all 'N'

  #119 opened 2 years ago by cbielow
  6

• [FEATURE] improve TMT/iTRAQ reporter intensity plot

  #123 opened 2 years ago by cbielow
  1

• Report creation fails if very old PTX-QC version was run on the same dataset

  #118 opened 2 years ago by cbielow
  0

• Error in qualUniform(x$ratio, x$count) : Error: qualUniform() received negative or missing data!

  #121 opened 2 years ago by Maithy15
  3

• Report generation fails

  #110 opened 3 years ago by cbielow
  3

• EVD: Top5 contaminants

  #108 opened 3 years ago by angelawu-wustl
  6

• DragNdrop: Duplicated input given to "shortenString"

  #62 opened 3 years ago by Paulinette
  4

• PTXQC with MaxQuant results from timsTOF data

  #106 opened 3 years ago by bidiman
  1

• New metric implementation - visualizing iRTs peptides

  #83 opened 4 years ago by MiguelCos
  5

• 'match' requires vector arguments

  #103 opened 4 years ago by mtinti
  9

• Decoy distribution is missing MSMS mass error plot

  #102 opened 4 years ago by cbielow
  0

• PAR: parameters is missing important fields

  #101 opened 4 years ago by cbielow
  0

• Detect wrong language bug

  #86 opened 4 years ago by cbielow
  1

• MBR metrics are missing

  #97 opened 4 years ago by cbielow
  1

• HTML report checks MaxQuant locale settings (. vs ,)

  #98 opened 4 years ago by cbielow
  0

• createReport should write a log file

  #94 opened 4 years ago by cbielow
  1

• License

  #92 opened 4 years ago by fabianegli
  5

• PTXQC issue: hangs when Creating Report file

  #93 opened 4 years ago by Alxcho
  3

• MissedCleavages plot missing

  #90 opened 4 years ago by cbielow
  12

• Wrong score for MSMSScans Intensity

  #91 opened 4 years ago by cbielow
  0

• error: cannot open file `Rplots.pdf`

  #82 opened 4 years ago by MiguelCos
  1

• mzTabReader is still broken

  #85 opened 4 years ago by cbielow
  0

• MzTabReader broken

  #81 opened 5 years ago by cbielow
  0

• Weird formatting and character duplications in tables

  #78 opened 5 years ago by jpfeuffer
  0

• mztab file exported from PD2.2 meet error in raw_filenames

  #77 opened 5 years ago by iszhi
  4

• Pandoc document conversion failed with error 61

  #75 opened 5 years ago by mikulasekkamil
  4

• Cannot make it run

  #71 opened 5 years ago by witszymanski
  3

• Error in data.table(df_reps)

  #56 opened 6 years ago by marioernestovaldes
  9

• How to use it??

  #53 opened 6 years ago by sorenwacker
  4

• Error in !df_msms$contaminant

  #55 opened 6 years ago by marioernestovaldes
  2

• PTXQC for Bruker's TimsTOF data

  #54 opened 6 years ago by fazeliniah
  2

• Installation in conda environment

  #52 opened 6 years ago by sorenwacker
  1

• Crash on MSMSScans

  #51 opened 6 years ago by cbielow
  0

• Shortened raw file names are not unique. Error during report generating - v0.92.4

  #49 opened 6 years ago by mikulasekkamil
  1

• No report build

  #48 opened 6 years ago by fcsigloch
  3

• LCSn Does Not Return Longest Substring

  #43 opened 7 years ago by carpenitoThomas
  2

• Report generation fails when only a subset of files are available

  #41 opened 7 years ago by cbielow
  1

• Custom contaminant plot error

  #40 opened 7 years ago by cbielow
  1