metabolic-networks
There are 20 repositories under metabolic-networks topic.
cnapy-org/CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
johon-lituobang/MM
Infer metabolic directions from moment differences of mass-weighted intensity distributions
Waschina/cobrar
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
sysbiolux/DCcov
Drug repositioning of single and drug combinations using Flux Balance Analysis.
Robaina/Netflowpy
A python tool to optimize chemical concentration trajectories in network-based chemical systems
pregnault/samplelim
MCMC sampling algorithms for linear inverse models in R
sysbiolux/IDARE
IDARE - Multiomics Visualisation in Cytoscape
sysbiolux/Herbal_drug_prediction
A workflow for ranking herbal drugs using metabolic modeling and flux variability anaylsis.
MateJozsaPhys/CNDinvestigation
Opportunities and challenges in partitioning the graph measure space of real-world networks
sysbiolux/GliomaGEM
Glioma metabolic modelling for repurposing of single and combination drugs
sysbiolux/MelanomaPaper
Consensus models of Bintener et al. 2023
sysbiolux/MidbrainOrganoid_Miro1_scMetabMod
Multi-cell population modelling predicts metabolic activity of midbrain organoids