metabolomics-pipeline
There are 25 repositories under metabolomics-pipeline topic.
EMSL-Computing/CoreMS
CoreMS is a comprehensive mass spectrometry software framework
workflow4metabolomics/tools-metabolomics
Galaxy tools for metabolomics maintained by Workflow4Metabolomics
zmahnoor14/MAW
Metabolome Annotation Workflow
AberystwythSystemsBiology/pyMEAN
A Python package for metabolite enrichment analysis.
jwist/hastaLaVista
R package that provide interactive graphical interface for metabolic profiling
CHKim5/LMSstat
Package for automation of statistics that are widely used in metabolomics.
idslme/IDSL.CSA
Composite Spectra Analysis
klevdiamanti/MS_targeted
MS_targeted is an open-source command-line pipeline for statistical analysis of mass spectrometry metabolomics data.
tnaake/MetCirc
GitHub repository for MetCirc. The development version in Bioconductor can be found at:
AlinaPeluso/PhenoMeNal
R package for the estimation of metabolome-wide significance level and corresponding effective number of tests
cbib/DIMet
Differential analysis of targeted Isotope-labeled Metabolomics data
aeiwz/lingress
The lingress project is to develop the pipeline to analyse the Nuclear magnetic resonance (NMR) dataset using a univariate linear regression model. This package contains the analysis with linear regression (OLS) and visualises the interpretation of the results with a p-value of all NMR peaks.
MetaboHUB-MetaToul-FluxoMet/RTMet
RTMet is a data workflow to process FIA-MS data coming from a bioreactor, find metabolites and fluxes, and send a feedback command to the system.
tnaake/MetNet
GitHub repository for MetNet. The development version in Bioconductor can be found at:
ChrisZasa/fluffy-adventure
MTXQCvX2 fluffy adventure is a quality and data processing tool for GC-MS based metabolomics experiments.
jasenfinch/hrm
Easily install, load and update R packages for high-resolution metabolomics analyses
jasenfinch/metaboWorkflows
Workflow Project Templates for Metabolomics Analyses
ShawnWx2019/MetMiner
MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
yebigithub/GBLUP4Met
Role of genomics on regulating rice grain metabolic variability under warmer nights: A statistical and image-based deep learning approach
AlinaPeluso/MetaboFlow
R pipeline for the processing and analysis of Ionomics data
ardigen/nasqq
NASQQ: end-to-end Nextflow pipeline designed for automated analysis of 1D 1H NMR proton magnetic resonance spectra.
austinchia/Myopia_Mouse_Analysis
Time series study on Myopia in Mouse Model
ShawnWx2019/metminer-cookbook
cookbook for MetMiner
austinchia/FRZB_Protein
Data cleaning and preparation of FRZB gene protein MS data