metagenomics-toolkit

There are 9 repositories under metagenomics-toolkit topic.

  • EBI-Metagenomics/emg-toolkit

    MGnify API toolkit

    Language:Python194174

  • new-atlantis-labs/Living-Oceans

    🌊 Robust workflows for gathering data about your local ocean.

    Language:Jupyter Notebook15401

  • wshuai294/PStrain

    Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.

    Language:Shell81151

  • omics-lab/VirusTaxo

    VirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment

    Language:Python6121

  • Dreycey/PhageScanner

    A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.

    Language:Jupyter Notebook4100

  • evanroyrees/Automappa

    An interactive interface for exploration of highly complex metagenomes

    Language:Python31263

  • linsalrob/atavide

    Atavistic processing of metagenomics data.

    Language:Python2372
  • MetaTag

    Robaina/MetaTag

    metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement

    Language:Python12700

  • GudaLab/StrainIQ

    StrainIQ is an n-gram based method to identify and quantify microbial communities in metagenomics samples.

    Language:Python0101