motif-analysis

There are 36 repositories under motif-analysis topic.

  • CostaLab/reg-gen

    Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

    Language:Python1061122430

  • baggepinnen/MatrixProfile.jl

    Time-series analysis using the Matrix profile in Julia

    Language:Julia33737

  • saketkc/pyseqlogo

    Python package to plot sequence logos

    Language:Python293618

  • bjmt/universalmotif

    Motif manipulation functions for R.

    Language:R262228

  • MicrobialDarkMatter/nanomotif

    Nanomotif - a tool for identifying methylated motifs in metagenomic samples

    Language:Python242361

  • evanseitz/squid-nn

    surrogate quantitative interpretability for deepnets

    Language:Python20201

  • soedinglab/BaMMmotif2

    Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

    Language:C++1310145

  • zeyang-shen/maggie

    Bioinformatic approach to identify functional transcription factor binding motifs

    Language:Python9120
  • Motif-detection-VB6

    Gagniuc/Motif-detection-VB6

    This application searches inside a text sequence for words that resemble those inside a list of similar words.

    Language:Visual Basic 6.08204

  • j-andrews7/pytfmpval

    Python bindings for the TFM-Pvalue program.

    Language:C++7324

  • pbloem/motive

    A proof-of-concept library for motif analysis using MDL techniques.

    Language:Java6130

  • eugene-kamenev/tsmp4j

    Time Series with Matrix Profile in Java

    Language:Java4401
  • Sequence-Logo-relative-style-with-axes

    Gagniuc/Sequence-Logo-relative-style-with-axes

    Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

    Language:HTML410
  • Sequence-Logos-based-on-maximum-values

    Gagniuc/Sequence-Logos-based-on-maximum-values

    Sequence Logos based on maximum values is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.

    Language:HTML4101
  • Sequence-Logos-using-logarithms

    Gagniuc/Sequence-Logos-using-logarithms

    Sequence Logos using logarithms is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

    Language:HTML410

  • VorontsovIE/diHOCOMOCO

    Scripts for motif assessment for HOCOMOCO v10/v11.

    Language:Ruby4200
  • DNA-motif-sequences-to-Sequence-Logos

    Gagniuc/DNA-motif-sequences-to-Sequence-Logos

    This implementation is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

    Language:HTML310

  • Shuyib/Phylogenetic-tree-study

    Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7

    Language:Jupyter Notebook35185

  • evanseitz/squid-manuscript

    squid repository for manuscript analysis

    Language:Python2101
  • Sequence-Logo-block-style-with-axes

    Gagniuc/Sequence-Logo-block-style-with-axes

    Sequence Logo - block style with axes (native Java Script) is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.

    Language:HTML210

  • shahrivari/jackrabbit

    Fast Motif Finder

    Language:Kotlin2101

  • shao-lab/MAmotif

    An integrative toolkit for detecting cell type-specific regulators

    Language:Python2200

  • almeidasilvaf/magrene

    Motif analysis in gene regulatory networks

    Language:R1100

  • GiorgioMB/auto_dotmotif

    Automatic Motif Detection wrapper for dotmotif

    Language:Python1100

  • JasonLinjc/deepMotifSyn

    A deep learning approach to synthesize heterodimeric DNA motifs

    Language:Jupyter Notebook1100

  • jawa23bio/ATAC-Seq

    Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.

    Language:HTML1100

  • jazzwang/f-motif

    Protein phosphorylation motif finder based on clustering analysis

    Language:Java120
  • pip-prom-tom

    lalebot/pip-prom-tom

    Pipeline webscraping to extract and download Solanum lycopersicum promotors

    Language:Python1100

  • Carry1995G/Towards_epigenetic_signature_of_RY_and_Telobox_related_cis-motifs

    Bioinformatic cis-motif-, H3K27me3 correlation- and GO-analysis conducted for my master's thesis

    Language:Shell0100

  • GStepien/Transceiver_Framework

    Transceiver Framework: A framework for concurrent multi stage processing of data & MDP: An online motif detector and predictor embedded in the transceiver framework.

    Language:Java0000

  • romain-villa/diff-motif_project

    Enrichment analysis of motifs with ancient and recent CNEs

    Language:R0101

  • TanerArslan/farnesylation_motif_search

    Proteome-wide motif search for specific PTM(Post Translational Modification)

    Language:Python0200

  • tksaha/random-graph-generator

    Random Graph Generation

    Language:Python0201

  • dieterich-lab/siteblast

    Rapid and sensitive local alignment of genomic sequences employing motif anchors

    Language:C40

  • foriin/te_motif

    Shiny app for screening for core promoter occurrences close to expressed transposons TSSs.

    Language:R10

  • pnpnpn/gimsan-py

    GIMSAN: motif-finder with biologically realistic and reliable statistical significance analysis

    Language:C20