CostaLab/reg-gen

Issues

• Why do columns "V4" have negative value?

  #286 opened 3 months ago by xiasijian
  0

• rgt-hint differential Error

  #285 opened 3 months ago by nihenniuwa
  0

• rgt-TDF problem

  #284 opened 4 months ago by Charbelfeg
  1

• genome_hg38.fa

  #283 opened 4 months ago by lyx-lin
  0

• HINT-ATAC differential: uniform y-axis for different plots

  #282 opened 4 months ago by konsta-kukkonen
  0

• P-value THOR

  #281 opened 4 months ago by sathvik-samaga
  0

• Issues with rgt-motifanalysis

  #280 opened 5 months ago by RaghadShu
  1

• reg-gen for non-model organism

  #279 opened 6 months ago by francicco
  0

• ImportError: cannot import name 'mat' from 'numpy' - issues with rgt-hint

  #275 opened 6 months ago by RaghadShu
  3

• unable to generate the index.html file When using TDF

  #277 opened 6 months ago by zisweet
  0

• Update to JASPAR 2022

  #274 opened 6 months ago by kelly-sovacool
  0

• configparser.NoOptionError: No option 'gene_regions' in section: 'hg38'

  #273 opened 6 months ago by zisweet
  2

• Transcription factor scatter plot

  #261 opened a year ago by gf5634
  2

• IndexError: index is out of bounds

  #272 opened 8 months ago by sathvik-samaga
  0

• warnings/errors in rgt-THOR

  #271 opened 8 months ago by sunta3iouxos
  0

• rgt-THOR multiple warnings for wigToBigWig

  #270 opened 8 months ago by sunta3iouxos
  0

• Extension sizes estimated with THOR

  #266 opened 8 months ago by dmitrymyl
  1

• failed installation on Mac mini with Apple M2 Chip

  #269 opened 9 months ago by JianxunHan
  1

• Deprecation warnings, non-compatibility with python 3.12, libpng12.so.0

  #268 opened a year ago by StrohD
  0

• Error in rgt-hint differential for my own data

  #267 opened a year ago by junichitaniguchi
  0

• Fold-change values in THOR differential peaks and post-processed bigwigs

  #265 opened a year ago by dmitrymyl
  0

• Result file description

  #264 opened a year ago by ilead-cong
  0

• aarch64 support

  #262 opened a year ago by EricDeveaud
  0

• RGT Hint differential error

  #260 opened a year ago by gf5634
  5

• ResourceWarning: unclosed file (Enable tracemalloc to get the object allocation traceback)

  #259 opened a year ago by sunta3iouxos
  0

• Issue running on Macbook Pro M1

  #253 opened a year ago by rm1238
  18

• #The version of JASPAR

  #255 opened a year ago by Mariokey
  1

• Motif enrichment scores

  #254 opened 2 years ago by amwa
  1

• Number of success in mpbs.bed and fulltest_statistics.txt files did not match

  #256 opened 2 years ago by hhvu0102
  0

• Question regarding how Lineplots values are calculated, related to #116

  #252 opened 2 years ago by AlexBlais74
  1

• RGT installation successful, but rgtdata folder is missing.

  #251 opened 2 years ago by mdu4003
  5

• OverflowError: cannot convert float infinity to integer

  #249 opened 2 years ago by li1311139481
  3

• invalid load key, '\x00'

  #250 opened 2 years ago by shenweiyan
  0

• rgt-hint throwing an error (without any other input) post-installation (Linux)

  #247 opened 2 years ago by sufyazi
  10

• TDF issue

  #248 opened 2 years ago by iorilondon
  2

• RGT_Differential_Error

  #246 opened 2 years ago by rm1238
  5

• Questions about motif matching

  #245 opened 2 years ago by hhvu0102
  0

• RGT-HINT genome files are incompatible with nf-core ATAC-seq pipeline.

  #232 opened 2 years ago by hyjforesight
  1

• KeyError: 'GL456233.2'

  #243 opened 2 years ago by czfoo
  2

• Generating mtf file

  #244 opened 2 years ago by czfoo
  0

• rgt shifting

  #233 opened 2 years ago by Andi964
  1

• RGT-HINT Wrong Species TF Hits

  #230 opened 2 years ago by gulumy
  2

• rgt-THOR IndexError: list index out of range

  #239 opened 2 years ago by SophieEhres
  0

• RGT-HINT:How to input more than one replicate during one group

  #238 opened 2 years ago by wvdon
  1

• Lineplot for specific transcription factor

  #236 opened 2 years ago by konsta-kukkonen
  1

• THOR "IndexError: cannot do a non-empty take from an empty axes" issue

  #234 opened 2 years ago by juylmin
  0

• Error of running rgt-viz on Apple M1 chip

  #229 opened 2 years ago by lzj1769
  1

• RGT-Viz tutorial currently does not work

  #224 opened 2 years ago by lzj1769
  1

• Cannot install THOR

  #217 opened 2 years ago by JohnsonStev
  2

• add bos taurus genome

  #218 opened 2 years ago by ZgtL15
  7