Pinned Repositories
reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
scMEGA
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
scopen
scOpen: single-cell open chromatin analysis via NMF modelling
7th_place_solution_Single-Cell-Perturbations
EncodeImputation
kaggle_HPAIC
kaggle_scp
kaggle_UCSI
lzj1769.github.io
Personal academic website
pychromVAR
A python package for chromVAR
lzj1769's Repositories
lzj1769/kaggle_scp
lzj1769/lzj1769.github.io
Personal academic website
lzj1769/7th_place_solution_Single-Cell-Perturbations
lzj1769/algorithm_from_scratch
lzj1769/bioconda-recipes
Conda recipes for the bioconda channel.
lzj1769/dropbox_uploader
lzj1769/ATACtools
Tools for analysis of ATAC-seq
lzj1769/awesome-topic-models
✨ Awesome - A curated list of amazing Topic Models (implementations, libraries, and resources)
lzj1769/chromap
Fast alignment and preprocessing of chromatin profiles
lzj1769/chrombpnet
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
lzj1769/dictys
Context specific and dynamic gene regulatory network reconstruction and analysis
lzj1769/ecosystem-packages
Registry for scverse ecosystem packages
lzj1769/epi-SHARE-seq-pipeline
Epigenomics Program pipeline to analyze SHARE-seq data.
lzj1769/insolitum
lzj1769/MAST
Tools and methods for analysis of single cell assay data in R
lzj1769/MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
lzj1769/muon
muon is a multimodal omics Python framework
lzj1769/openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
lzj1769/PRINT
lzj1769/pyMAST
Tools and methods for analysis of single cell assay data in Python
lzj1769/pyranges
Performant Pythonic GenomicRanges
lzj1769/scikit-learn
scikit-learn: machine learning in Python
lzj1769/scvi-tools
Deep probabilistic analysis of single-cell omics data
lzj1769/spatial-factorization-py
Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
lzj1769/svg_packages
lzj1769/trendsceek
Identify genes with spatial expression trends in single-cell gene expression data
lzj1769/tutorial-template
Template for the Read the Docs tutorial
lzj1769/umap
Uniform Manifold Approximation and Projection
lzj1769/visium_heart
Spatial transcriptomics of heart tissue
lzj1769/word_cloud_publications