CostaLab

Aachen, Germany

Pinned Repositories

CimpleG
CimpleG, an R package to find (small) CpG signatures.
Language:R4 3 20
CrossTalkeR
R package to do the Ligand Receptor Analysis Visualization
Language:Jupyter Notebook41 6 1910
MOJITOO
MOJITOO: a fast and universal method for integration of multimodal single cell data
Language:R9 8 10
PILOT
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
Language:Python9 4 32
reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Language:Python103 12 21930
sc2marker
Surface Marker Detection Using Single Cell Data
Language:HTML8 6 12
scMEGA
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
Language:R36 6 232
scopen
scOpen: single-cell open chromatin analysis via NMF modelling
Language:Python25 6 104
scopen-reproducibility
A repository to include all scripts and codes for reproducibility of scOpen manuscript
Language:HTML6 6 11
scrna_seurat_pipeline
comprehensive analysis of single-cell transcriptomics data
Language:R19 8 159

CostaLab's Repositories

CostaLab/reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Language:Python103 12 21930
CostaLab/CrossTalkeR
R package to do the Ligand Receptor Analysis Visualization
Language:Jupyter Notebook41 6 1910
CostaLab/scMEGA
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
Language:R36 6 232
CostaLab/scopen
scOpen: single-cell open chromatin analysis via NMF modelling
Language:Python25 6 104
CostaLab/scrna_seurat_pipeline
comprehensive analysis of single-cell transcriptomics data
Language:R19 8 159
CostaLab/MOJITOO
MOJITOO: a fast and universal method for integration of multimodal single cell data
Language:R9 8 10
CostaLab/PILOT
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
Language:Python9 4 32
CostaLab/sc2marker
Surface Marker Detection Using Single Cell Data
Language:HTML8 6 12
CostaLab/scopen-reproducibility
A repository to include all scripts and codes for reproducibility of scOpen manuscript
Language:HTML6 6 11
CostaLab/CimpleG
CimpleG, an R package to find (small) CpG signatures.
Language:R4 3 20
CostaLab/sigurd
Using single cell genotype data, the cells are annotated and analysed.
Language:R3 2 0
CostaLab/phlower
Use hodge decomposition for trajectory analysis
Language:Python2 7 00
CostaLab/RNA_Expression_Analysis_in_Python
Language:Jupyter Notebook2 7 01
CostaLab/SOSE_2021
A repository of materials for the SOSE2021 course of CostaLab
Language:Shell2 8 01
CostaLab/pyCrossTalkeR
Language:Jupyter Notebook1
CostaLab/ArchRNA
ArchR extension to analyze single cells transcriptome
Language:Jupyter Notebook7 01
CostaLab/bulk_RNASeq
Bulk RNAseq R pipeline
Language:R5 0
CostaLab/cellxgene_submission
Code for preparing cellxgene data submission
Language:Jupyter Notebook7 0
CostaLab/costalab.github.io
The repository for CostaLab website
Language:HTML5 0
CostaLab/CostaLab_PhD_Thesis_Template
This is a Latex template for PhD thesis in Costalab
Language:TeX6 0
CostaLab/kidney_injury_lineage
Lineage tracing reveals transient phenotypic adaptation of tubular cells during acute kidney injury
Language:R6 0
CostaLab/LR2TF
Language:R4 0
CostaLab/MOJITOO-reproducibility
Language:R8 0
CostaLab/mouse_heart_MI
Codes for analysis of mouse heart MI scATAC-seq data
Language:R4 0
CostaLab/multi_omics_heart_failure
Code for single-cell multiomics analysis of human heart failure
Language:Jupyter Notebook7 0
CostaLab/SingleCellSignalR_v1
R package
Language:HTML2 01
CostaLab/SNPnet
Language:Jupyter Notebook6 0
CostaLab/SOSE2022
Material for the spring course sc(RNA+ATAC)
5 0
CostaLab/spatial_multiomic_mi
Language:HTML5 0
CostaLab/talklr
Language:R2 0