motif-discovery
There are 75 repositories under motif-discovery topic.
TDAmeritrade/stumpy
STUMPY is a powerful and scalable Python library for modern time series analysis
target/matrixprofile-ts
A Python library for detecting patterns and anomalies in massive datasets using the Matrix Profile
matrix-profile-foundation/matrixprofile
A Python 3 library making time series data mining tasks, utilizing matrix profile algorithms, accessible to everyone.
matrix-profile-foundation/go-matrixprofile
golang library for computing matrix profiles along with other time series analysis features
aplbrain/dotmotif
A performant, powerful query framework to search for network motifs
patrickzib/motiflets
Motiflets
GreenleafLab/motifmatchr
Fast motif matching in R
baggepinnen/MatrixProfile.jl
Time-series analysis using the Matrix profile in Julia
asntech/pyjaspar
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
ksanjeevan/ts-motif-detection
Time Series Motif Detection in Python
shao-lab/MotifScan
A motif discovery tool to detect the occurrences of known motifs
ML-KULeuven/locomotif
LoCoMotif is a time series motif discovery method that discovers variable-length motif sets in multivariate time series using time warping
macks22/motif-classify
Classify time series data using motifs discovered from Sequitur processing of SAX discretized data.
soedinglab/BaMMmotif2
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
Kyubyong/neurobind
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
microsoft/BindVAE
Variational Auto Encoders for learning binding signatures of transcription factors
saketkc/moca
:m: Tool for motif conservation analysis
soedinglab/PEnG-motif
PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.
mettekou/MatrixProfile
The matrix profile data structure and associated algorithms for mining time series data
BIMSBbioinfo/RCAS
R package for the RNA Centric Annotation System (RCAS)
mbelmadani/motifgp
Motif discovery for DNA sequences using multiobjective optimization and genetic programming.
MyersGroup/MotifFinder
An R package for de novo discovery of enriched DNA motifs (e.g. TFBS)
pbloem/motive
A proof-of-concept library for motif analysis using MDL techniques.
temporal-graphs/STM
Structural Temporal Modeling to characterize temporal networks
icaoberg/docker-meme-suite
:whale: :computer: Docker recipe for meme-suite
stackedq/Motif-discovery
Motif discovery done by AI algorithms and python.
eugene-kamenev/tsmp4j
Time Series with Matrix Profile in Java
Milad137/Motif-Discovery
modified exact discovery of time series motifs
soedinglab/BaMM_webserver
Webserver for motif discovery with higher-order Bayesian Markov Models (BaMMs)
tksaha/motif-finding
Finding Network Motifs Using MCMC Sampling
VorontsovIE/diHOCOMOCO
Scripts for motif assessment for HOCOMOCO v10/v11.
burkesquires/FeaVar
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
Shuyib/Phylogenetic-tree-study
Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7
frankchen121212/RHSNet
Tensorflow and Keras implementation of RHSNet for recombination hotspot identification and quantification
kairitanaka/gibby
Gibby is a Python package designed to find the motif of a transcription factor de novo based on ChIP-seq data.
parthian-sterlet/sitega
The software package SiteGA for de novo motif search in ChIP-seq data