mutect
There are 4 repositories under mutect topic.
gatk-workflows/gatk4-somatic-snvs-indels
This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
IARCbioinfo/mutect-nf
Mutect pipeline with Nextflow
RRafiee/GenomeAnalysisToolkit
Genome Analysis Toolkit
rhshah/basicfiltering
Basic filtering scripts for various mutation calling tools