neuroimaging-analysis

muschellij2/fslr

FSL-R Interface package

BrainDynamicsUSYD/NeuroPattToolbox

MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

InsightSoftwareConsortium/ITKSkullStrip

Perform automatic skull-stripping for neuroimage analysis

slamballais/QDECR

The QDECR package for vertex-wise analyses in R

liu-yikang/rat_rsfmri_preprocessing

Preprocessing toolbox for rat rs-fMRI data

BrainDynamicsUSYD/BrainPalimpsest

Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity

miac-research/psmd

Peak width of Skeletonized Mean Diffusivity (PSMD)

liu-yikang/SHERM-rodentSkullStrip

Implementation of algorithm in 'Yikang Liu et al. (2020) Automatic Brain Extraction for Rodent MRI Images. Neuroinformatics. doi: 10.1007/s12021-020-09453-z''

ChristianGaser/tfce

Threshold-free cluster enhancement toolbox for Matlab

DynamicsAndNeuralSystems/humanStructureFunction

Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP

spisakt/PUMI

Pypelines Utilizing a Modular Inventory

branelab/SimMEEG

Software for simulating MEG and EEG event-related responses. functional connectivity, and phase-amplitude coupling

dangom/fslx

A simple and intuitive wrapper for FSL tools.

neuroboros/neuroboros

Neuroimaging analysis in Python

tommysprague/preproc_shFiles

Prisma preprocessing (AFNI)

iguanamarina/neuroSCC

This package provides auxiliary functions for calculating Simultaneous Confidence Corridors (SCCs) on PET neuroimaging data. This package is developed as an auxiliary package to the project:

MRI-NOBEL/Perfusion-NOBEL

Pre-clinical DSC-MRI perfusion map generator written in Python

NeuroLife77/pystorm

Python implementation of various Brainstorm functions, often written for GPU or jit speed-up.

raamana/niatlas

Atlas methods and classes for neuroimaging

scho97/CompareModality

Analysis of the EEG LEMON and MEG CamCAN datasets

adliska/roditore

Collection of scripts for resting-state fMRI analysis

bsl-tools/bsl-tools.github.io

GitHub Pages for BSL.

NatashaLTaylor/Brainstem_Attractor_Landscape

Code repository for the paper - 'The structural and functional connectivity between distinct neuromodulatory systems underpins dynamic shifts in brain network topology and attractor landscape topography', Taylor et al. (2022)

remolek/NFC

This is a repository of MATLAB codes accompanying the paper "Non-linear functional co-activations: directed, dynamic, and delayed"

scho97/AnalyzeNTAD

Analysis of the NTAD dataset

kedar-codes/hippo_morph

Current code for my hippocampal morphometry workflow, based on the hippodeep_pytorch segmentation program and the SlicerSALT shape analysis software.

kedar-codes/hippo_morph_old

The old, outdated code for my hippocampal morphometry pipeline.

m-guseva/brain-area-localization-helper

Creates a neat table of SPM results including brain areas for each coordinate extracted with mni2atlas toolbox

NPACore/awesome-neuroimaging

Exploring, organizing, and analysing neuroimages (MR focus)

pradhanhitesh/neuroimage-plugins

Small plugins for some popular softwares to make neuroimaging analysis workflow easy

txusser/anapyze

A set of tools for medical imaging processing and analysis that I have been crafting over the years.

CBICA/NiChart_Website

The Landing page for the NiChart project

juliam98/Schizotypy-receptor-maps

Omar-Saad-ELGharbawy/Investigating-Cognitive-Control-via-fMRI

Explore the neural basis of cognitive control with this repository's in-depth analysis of the Flanker Dataset using fMRI. Using bash scripting to streamline preprocessing and ROI analysis, while incorporating R scripts to explore brain region activity during the task.

thanhtbt/computer-aided-methods-for-Alzheimer-disease-detection

A list of up-to-date papers on computer-aided methods for Alzheimer detection