neuroimaging-analysis
There are 52 repositories under neuroimaging-analysis topic.
bioimagesuiteweb/bisweb
This is the repository for the BioImage Suite Web Project
muschellij2/fslr
FSL-R Interface package
NPACore/awesome-neuroimaging
Exploring, organizing, and analysing neuroimages (MR focus)
BrainDynamicsUSYD/NeuroPattToolbox
MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney
neuroboros/neuroboros
Neuroimaging analysis in Python
miac-research/psmd
Peak width of Skeletonized Mean Diffusivity (PSMD)
InsightSoftwareConsortium/ITKSkullStrip
Perform automatic skull-stripping for neuroimage analysis
slamballais/QDECR
The QDECR package for vertex-wise analyses in R
Elata-Biosciences/elata-eeg
Open Source EEG
ChristianGaser/tfce
Threshold-free cluster enhancement toolbox for Matlab
liu-yikang/rat_rsfmri_preprocessing
Preprocessing toolbox for rat rs-fMRI data
BrainDynamicsUSYD/BrainPalimpsest
Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity
liu-yikang/SHERM-rodentSkullStrip
Implementation of algorithm in 'Yikang Liu et al. (2020) Automatic Brain Extraction for Rodent MRI Images. Neuroinformatics. doi: 10.1007/s12021-020-09453-z''
OHBA-analysis/Cho2024_MEEG_RSN
Scripts for the Cho et al. (2024) manuscript
branelab/SimMEEG
Software for simulating MEG and EEG event-related responses. functional connectivity, and phase-amplitude coupling
NeuroLife77/pystorm
Python implementation of various Brainstorm functions, often written for GPU or jit speed-up.
VoxLogicA-Project/VoxLogicA-UI
A modern web interface for VoxLogicA, the Voxel-based Logical Analyser.
DynamicsAndNeuralSystems/humanStructureFunction
Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP
spisakt/PUMI
Pypelines Utilizing a Modular Inventory
dangom/fslx
A simple and intuitive wrapper for FSL tools.
EuroPAD/EuroPAD_Neuroimaging
Scripts, atlases etc. used for MRI & PET research in the AMYPAD consortium
MRI-NOBEL/Perfusion-NOBEL
Pre-clinical DSC-MRI perfusion map generator written in Python
tommysprague/preproc_shFiles
Prisma preprocessing (AFNI)
iguanamarina/neuroSCC
Auxiliary functions for calculating Simultaneous Confidence Corridors (SCCs) on PET neuroimaging data.
raamana/niatlas
Atlas methods and classes for neuroimaging
scho97/AnalyzeNTAD
Analysis of the NTAD dataset
scho97/CompareModality
Analysis of the EEG LEMON and MEG CamCAN datasets
adliska/roditore
Collection of scripts for resting-state fMRI analysis
bsl-tools/bsl-tools.github.io
GitHub Pages for BSL.
CBICA/NiChart_Website
The Landing page for the NiChart project
Fundacion-CIEN/anapyze
A set of tools for medical imaging processing and analysis that I have been crafting over the years.
NatashaLTaylor/Brainstem_Attractor_Landscape
Code repository for the paper - 'The structural and functional connectivity between distinct neuromodulatory systems underpins dynamic shifts in brain network topology and attractor landscape topography', Taylor et al. (2022)
remolek/NFC
This is a repository of MATLAB codes accompanying the paper "Non-linear functional co-activations: directed, dynamic, and delayed"
italoxaviercp/Structural-Connectivity-DTI-Multi-Tools
This project was a Ferrari for my Master's in Neuroscience. A new routine using multi tools, in command lines structure, to execute structural connectivity analysis (fow windows users). Uses BrainSuite, MatLab Toolboxes: SPM12/Tractconnect, and others. I did not use CHATGPT!!!
pradhanhitesh/SANSCOG-MRI-Pipeline
SANSCOG-MRI-Pipeline streamlines neuroimaging workflows for the SANSCOG study, offering scripts for preprocessing, data management, extraction, and analysis, ensuring efficient handling of MRI data and reproducible research practices.