openslide

There are 41 repositories under openslide topic.

  • libvips/libvips

    A fast image processing library with low memory needs.

    Language:C10.7k1382.4k715

  • ysbecca/py-wsi

    Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

    Language:Jupyter Notebook163104592

  • cshum/vipsgen

    Go binding generator for libvips image processing library

    Language:Go107363

  • GoogleCloudPlatform/wsi-to-dicom-converter

    Conversion tool/library for converting whole slide images to DICOM

    Language:C++84282527

  • haranrk/DigiPathAI

    Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

    Language:JavaScript7351527

  • zhaoxuanma/Deeplearning-digital-pathology

    Full package for applying deep learning to virtual slides.

    Language:Python693030

  • smujiang/WSITools

    Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

    Language:Python564316

  • jgamper/compay-syntax

    :microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

    Language:Python552111

  • lucasrla/wsi-preprocessing

    Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

    Language:Python552214

  • andreped/vsi2tif

    Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF

    Language:Jupyter Notebook232105

  • DIMAthe47/slide_viewer_47

    A pyqt5 widget for viewing whole-slide images with Openslide

    Language:Python22307

  • DSLituiev/slideslicer

    a toolbox for manipulation of digital pathology slides and annotations

    Language:Jupyter Notebook19204

  • deephealthproject/ecvl

    European Computer Vision Library (ECVL). A general-purpose computer vision library developed to support healthcare use cases within the DeepHealth project, with the aim of facilitating the integration of existing state-of-the-art libraries.

    Language:C++1810151

  • girder/large_image_wheels

    manylinux wheel files for girder/large_image dependencies

    Language:Dockerfile17253

  • steven22tom/LabelSlide

    LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)

    Language:JavaScript16103

  • BiologyTools/BioGTK

    A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

    Language:C#14212

  • InsightSoftwareConsortium/ITKIOOpenSlide

    An ITK ImageIO module for the OpenSlide library.

    Language:C++123069

  • hurryhuang1007/Xslide

    An application that can quickly view large images like .tif, .svs, .bif, .hdpi, .vms and .mrxs file(s).

    Language:JavaScript11011
  • python-sdk

    aignostics/python-sdk

    🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

    Language:Python9

  • shaziaakbar/deep-openslide

    A library for training deep neural networks using pathology data by accessing patches on-the-fly

    Language:Python6105

  • eipm/CIN

    Language:Python5416
  • slideToolKit

    swvanderlaan/slideToolKit

    slideToolkit: a free toolset for analyzing wholeslide high-resolution digital histological images.

    Language:Shell53172
  • TensorBoard_Plugin_WSI

    IAmS4n/TensorBoard_Plugin_WSI

    A plugin for TensorBoard to show WSI images. The plugin is based on Deep Zoom Image (DZI).

    Language:JavaScript4110

  • jammy-dodgers/gophenslide

    Unofficial Go bindings for OpenSlide (unused uni stuff)

    Language:Go4313

  • yujota/openslider-tfpy

    TensorFlow cunstom runner to read micro images from whole slide images.

    Language:Jupyter Notebook4210
  • 3Dhistopathology

    agam-kashyap/3Dhistopathology

    3D visualisation using Inviwo and OpenSlide

    Language:C++3004

  • arquolo/bipl

    Big Image Python Library

    Language:Python3100

  • BioImageInformatics/svs_reader

    Convenient interface for generating tiles from Aperio SVS format images

    Language:Python3101

  • DIMAthe47/slide_list_view_47

    A pyqt5 widget for viewing collection of whole-slide images with Openslide

    Language:Python3102

  • leesei/openslide-prop2json

    Parse OpenSlide properties (generated by `openslide-show-properties`) to JSON

    Language:JavaScript310

  • DIMAthe47/slide_cbir_47

    A pyqt5 GUI for CBIR in whole-slide images with Openslide

    Language:Python2202

  • Mudit219/3Dhistopathology

    3D visualisation using Inviwo and OpenSlide

    Language:C++2000

  • AnirbitGhosh/L4-Project

    Project title: Using Deep Learning to predict overall survival times for breast cancer from H&E whole slide biopsy

    Language:TeX1200

  • Anivader/CPATH

    This codebase provides computational pipelines for implementing Deep Learning-assisted Whole Slide Image (WSI) classification

    Language:Jupyter Notebook1100

  • Dart9000/OpenX

    Digital Open-source pathology tool based on OpenSlide with Manipulation & annotations feature.

    Language:Python1001

  • yjg30737/pyqt-wsi-viewer

    PyQt WSI(Whole Slide Images) viewer

    Language:Roff110