ysbecca/py-wsi
Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
Jupyter NotebookGPL-3.0
Issues
- 1
svs doubt
#47 opened by KARTHI2710 - 0
- 0
XML and Image Sample File
#45 opened by fadamsyah - 0
how to randomly draw a certain number of tiles from pre-extracted tiles from each WSI
#44 opened by cl2227619761 - 1
Ask a favor
#43 opened by zhufenglong2 - 0
Convert Ome.tiff to SVS
#42 opened by aminejarraya - 6
Dockerfile
#16 opened by cbeauhilton - 9
- 3
- 1
- 4
py_wsi could not import in python 3.7
#30 opened by WaqasHU - 2
Bad install on macOs Big Sur and python 3.9.0
#40 opened by Octopus-inc - 1
error installation on ubuntu
#19 opened by arcossci - 3
Calculating the number of patches.
#22 opened by Hyungsik-Jung - 1
Working with TIFF files
#35 opened by dannellyz - 1
TypeError: a bytes-like object is required, not 'NoneType' while loading loading patches and associated metadata from the lmdb using turtle manager
#29 opened by Arghya999 - 8
- 4
- 1
MapFullError
#13 opened by harishprabhala - 1
highest level
#38 opened by gnusnomis - 1
Slides are not annotated
#37 opened by tayyaba69 - 0
Deleted
#39 opened by kimalaacer - 1
Redundant writing to HDF5 and LMDB files.
#33 opened by mmikailov - 1
error while sampling and storing patches
#34 opened by shivampuri20 - 1
Sample data
#32 opened by yelaboratory - 1
- 5
Not importing in spyder annaconda and OSError: [WinError 126] The specified module could not be found
#25 opened by DevidasKushnure - 0
convert jpg or png image to svs file
#28 opened by yasohasakii - 1
Issue with reading patch_meta_db
#26 opened by sheikmohdimran - 0
Installation issue in anaconda 3
#23 opened by anupiyan - 1
storage_type
#20 opened by anfegon - 2
- 2
- 2
Unable to change the storage type to disk
#14 opened by Mounika2405 - 1
Retrieving patches using magnification.
#12 opened by anilk991 - 5
XML file issue
#11 opened by anilk991 - 8
Extracting particular label patches
#8 opened by Suvi-dha - 4
Minor issue with tab indentation
#9 opened by mingrui - 2
Return of retrieve_tile_dimensions
#6 opened by g8a9 - 1
- 6
Doubts about py_wsi xml file
#4 opened by luistelmocosta - 3
select_augment not defined
#5 opened by cbeauhilton - 1
Documentation for XML Tests
#3 opened by Suvi-dha - 1
- 4
error in installation
#1 opened by Suvi-dha