'storage_type' error still, after update the version of py-wsi

[dl-miao]

Hi, @ysbecca
Firstly, thanks a lot for your work!

I am a new to py_wsi, I met a problem when create the turtle object. Once I add the storage_type option, it will has the following error. I've read the previous issue, so I upgrade the the version of py-wsi, it still has the same problem!

----> 1 turtle = py_wsi.Turtle(file_dir, db_location, db_name, xml_dir=xml_dir, label_map=label_map, storage_type='lmdb')

TypeError: init() got an unexpected keyword argument 'storage_type'

[ysbecca]

Hmm... when you check the py-wsi code, in the file turtle.py (where the Turtle class is defined), do you see the storage_type parameter present?

[dl-miao]

hi @ysbecca
Thanks for your so quickly response! and sorry for my late reply. I've fix the error!

[nazim1021]

Hi @ysbecca @dl-miao , I am facing a similar error. I also checked the turtle.py file and storage_type parameter is present. Any idea on how do I fix this error ?
I have updated version of py-wsi and my python version is 3.7

[ysbecca]

Hmm, have you installed an older version using pip? Maybe when you import py_wsi you are importing the old version somehow.... I suggest adding a print statement inside the turtle file to confirm that you really are importing the correct version.

…

On Sat, 4 Jan 2020, 23:29 Nazim Shaikh, ***@***.***> wrote: Hi @ysbecca <https://github.com/ysbecca> @dl-miao <https://github.com/dl-miao> , I am facing a similar error. I also checked the turtle.py file and storage_type parameter is present. Any idea on how do I fix this error ? I have updated version of py-wsi and my python version is 3.7 — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#24?email_source=notifications&email_token=AAR53PRK2XA6AX7B6ZJMS7TQ4ELWDA5CNFSM4H33D2XKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEIDCRJY#issuecomment-570828967>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAR53PR7R3BGVKZ7HE2UFZLQ4ELWDANCNFSM4H33D2XA> .

[nazim1021]

Thanks so much for the response. Yes, it was the version issue, I had installed py_wsi through pip which had an older version. Later, I directly cloned the git repo and imported py_wsi through that and It worked well :)

[ysbecca]

Great! Glad you've got it sorted.

…

On Sun, 5 Jan 2020, 18:03 Nazim Shaikh, ***@***.***> wrote: Thanks so much for the response. Yes, it was the version issue, I had installed py_wsi through pip which had an older version. Later, I directly cloned the git repo and imported py_wsi through that and It worked well :) — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#24?email_source=notifications&email_token=AAR53PSLEGBG726A3MCEBV3Q4IOFRA5CNFSM4H33D2XKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEID4DOI#issuecomment-570933689>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAR53PV5KZDFHDHAB2HCAGDQ4IOFRANCNFSM4H33D2XA> .

[natachalevy]

Hi @ysbecca, I am experiencing the same issue! I cloned the git repo, I checked in the turtle file if the storage_type parameter was present and it is! But the same error keeps coming up. Do you have any other suggestions on how I could fix this error? Thanks a lot! :)

[ysbecca]

Hmm, you're sure you've completely uninstalled any old versions? If it's importing in the right files, it will see the storage_type param. Maybe stick a print statement inside the new version, to double check you're importing what you hope you are.

[ysbecca]

HI Natacha, You'll need to tell Python where the module you want to load is; ie, the simplest is if you are in a Python file at the same level as the py_wsi folder. Then a direct "import py_wsi" should work. If you aren't in that directory then you will need to tell Python where to find it. Rebecca

…

On Tue, Feb 9, 2021 at 10:13 AM natachalevy ***@***.***> wrote: Hi rebecca! Thanks for your fast response! I indeed still had an older version (downloaded with pip install) in my site packages so I uninstalled that. I reinstalled the package through cloning the git repo however now it doesn’t seem to find it anymore and gives me the ‘No module named ‘py_wsi’ ’. As you may tell I am not an experienced programmer and therefore I am having some trouble troubleshooting. I followed this tutorial to fork and clone the repo https://docs.github.com/en/github/getting-started-with-github/fork-a-repo. I am not sure how to deal with this issue now, do you think it might be because the py_wsi is in the folder py-wsi and my computer (mac) is having trouble finding it? Thank you again for your help 😊 Natacha From: Rebecca Stone ***@***.***> Reply to: ysbecca/py-wsi ***@***.***> Date: Tuesday, 9 February 2021 at 10:26 To: ysbecca/py-wsi ***@***.***> Cc: "Levy, Natacha (Stud. MSP)" ***@***.***>, Comment ***@***.***> Subject: Re: [ysbecca/py-wsi] 'storage_type' error still, after update the version of py-wsi (#24) Hmm, you're sure you've completely uninstalled any old versions? If it's importing in the right files, it will see the storage_type param. Maybe stick a print statement inside the new version, to double check you're importing what you hope you are. — You are receiving this because you commented. Reply to this email directly, view it on GitHub< #24 (comment)>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/AQGPMPFIZPQOF376ZLEORZ3S6D5UTANCNFSM4H33D2XA>. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#24 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAR53PWGLHBM44AXGHNMRWLS6EDDPANCNFSM4H33D2XA> .