outbreaks

reconhub/learn

RECON learn: a free, open platform for training material on epidemics analysis

outbreak-info/outbreak.info

During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.

covid-19-Re/estimateR

R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic

epiverse-trace/linelist

R package for handling linelist data

nfidd/nfidd

Course on nowcasting and forecasting of infectious disease dynamcis

epiverse-trace/simulist

An R package for simulating line lists

reconhub/recon-helpdesk

Open an issue in this repository if you have general questions about RECON packages

izabelalvares/MarburgVirus

This geospatial project maps Marburg virus transmission, a zoonotic disease with high case fatality rates in Africa. It highlights the need for medical treatment, isolation, and quarantine measures. Vaccines and contact tracing can limit the global spread of epidemics

wdzajicek/cdc-rss

Latest outbreaks & news releases from CDC.gov

outbreaksci/rapid-reviews

Rapid, open reviews of outbreak science preprint manuscripts.

Paalpha/ebola_out_simulation

Simulated data and experiments for the use of machine learning in outbreak parameter (CFR) estimation.

QIDSOD/QIDSOD-documentation

Documentation related to the project "Quantifying the Impact of Data Sharing on Outbreak Dynamics" (QIDSOD)

sempwn/cr0eso

Bayesian SEIR model fitting to multiple facility outbreaks

avallecam/incidenceflow