epiverse-trace/simulist

Issues

• Allow for reporting delays in line list simulation

  #152 opened 4 months ago by joshwlambert
  1

• Defaults for all arguments in exported functions

  #120 opened 4 months ago by joshwlambert
  5

• set risks to `NA` if processes not desired

  #146 opened 4 months ago by sbfnk
  8

• documentation for passing anonymous functions not clear

  #145 opened 4 months ago by sbfnk
  0

• Vectorise `.add_hospitalisation()`?

  #125 opened 5 months ago by joshwlambert
  0

• Package structure

  #127 opened 6 months ago by Karim-Mane
  5

• about the relationship between contact distribution, probability of infection, and basic reproduction number

  #139 opened 6 months ago by avallecam
  1

• `NA` vs `NULL` for non-used processes

  #147 opened 5 months ago by sbfnk
  1

• differenciate infectious and infected in arguments `infect_period` and `prob_infect`

  #138 opened 5 months ago by avallecam
  1

• Issue when using infectious period which can sample negative values

  #141 opened 5 months ago by joshwlambert
  1

• Release simulist 0.3.0

  #132 opened 6 months ago by joshwlambert
  2

• Partial argument matching turned off

  #1 opened 6 months ago by joshwlambert
  7

• Incorporate under-reporting of cases and contacts

  #119 opened 6 months ago by joshwlambert
  1

• Table of related packages/work

  #21 opened 6 months ago by jamesmbaazam
  3

• Another source of code for generating line lists

  #16 opened 6 months ago by sbfnk
  2

• CRAN release?

  #100 opened 8 months ago by Bisaloo
  1

• Person metadata show all NA on {epicontacts} interactive plotting

  #69 opened 7 months ago by joshwlambert
  4

• Should initial value of `num_cases` be 1 in `.sim_internal()`?

  #109 opened 7 months ago by jamesmbaazam
  3

• Keep `add_names` & `add_ct`?

  #41 opened 7 months ago by joshwlambert
  4

• Possibility to reintroduce `...` to pass arguments to branching process model

  #43 opened a year ago by joshwlambert
  9

• can we use `as.function()` to convert object to the `generate()` instead of `density()`?

  #107 opened 7 months ago by avallecam
  6

• Quick start example throwing error

  #105 opened 7 months ago by chartgerink
  5

• Search interval for maximum mortality risk

  #103 opened 7 months ago by pratikunterwegs
  1

• Functionality for time varying CFR and different delays depending on outcome

  #36 opened 7 months ago by adamkucharski
  13

• how to increase the amount of deaths within hospitalized cases? (not urgent)

  #102 opened 7 months ago by avallecam
  2

• Specifying columns when simulating outbreak data

  #94 opened 8 months ago by CarmenTamayo
  8

• Re-parameterise contact interval as infectious period?

  #61 opened 8 months ago by joshwlambert
  1

• Dates of simulated outbreak

  #92 opened 8 months ago by CarmenTamayo
  6

• Errors when changing parameter values

  #89 opened 9 months ago by CarmenTamayo
  5

• Release simulist 0.2.0

  #74 opened 9 months ago by joshwlambert
  1

• Disease/pathogen specific outbreak function?

  #76 opened 9 months ago by joshwlambert
  0

• Refactor simulation functions

  #42 opened 9 months ago by joshwlambert
  1

• add detailed argument description to acronym in `add_ct`

  #59 opened 10 months ago by avallecam
  1

• Refactor infection and contact simulation into joint process

  #58 opened 10 months ago by joshwlambert
  2

• Set seed in README

  #57 opened 10 months ago by joshwlambert
  0

• Contact distribution vs. offspring distribution

  #35 opened 10 months ago by sbfnk
  4

• Release simulist 0.1.0

  #32 opened a year ago by joshwlambert
  1

• More epidemic models to generate cases?

  #34 opened a year ago by joshwlambert
  0