pratikunterwegs
Research software engineer in epidemic modelling and pandemic preparedness.
London School of Hygiene and Tropical MedicineLondon
Pinned Repositories
atlas-best-practices
Source code for a paper on pre-processing high frequency animal tracking data.
atlastools
Tools for pre-processing high-throughput animal tracking data.
ebird-occu-wghats
Occupancy modelling of tropical montane passerines.
elemove
Source code for an entry to the BES mapping animal movements contest.
Epidemics.jl
Julia package to model epidemic scenarios; a translation of the R(cpp) package {epidemics}.
forest-clearance-india
Code to look at forest clearances by MOEF&CC GOI.
holeybirds
Movement strategies of moulting subtropical birds.
pathomove
Rcpp package providing an individual-based model to simulate the evolution of movement strategies under risk of pathogen spread.
tres-tidy-tutorial
A tidyverse tutorial for TRES.
watlastools
R package to handle tracking data from the WATLAS system.
pratikunterwegs's Repositories
pratikunterwegs/Epidemics.jl
Julia package to model epidemic scenarios; a translation of the R(cpp) package {epidemics}.
pratikunterwegs/airportscreening
Effectiveness of airport screening at detecting infected travellers
pratikunterwegs/epishiny
Tools for interactive visualisation of epidemiological linelist data
pratikunterwegs/epiverse-at-msf
Material to present Epiverse tools at the MSF Manson unit.
pratikunterwegs/pathomove
Rcpp package providing an individual-based model to simulate the evolution of movement strategies under risk of pathogen spread.
pratikunterwegs/vacamod
Demo for an {epidemics}-based modelling package implementing the RIVM Vacamole Covid-19 model.
pratikunterwegs/holeybirds
Movement strategies of moulting subtropical birds.
pratikunterwegs/data_pipelines
A collection of outbreak analytics pipelines using different infrastructures for automation.
pratikunterwegs/embarcadero
🌲🌉 Species distribution models with Bayesian additive regression trees
pratikunterwegs/epichains
Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models
pratikunterwegs/epinowcast
Flexible hierarchical nowcasting
pratikunterwegs/epiparameter
R package with epidemiological parameters for infectious diseases
pratikunterwegs/epipipe
pratikunterwegs/finalsize
R package implementing a final size epidemic model
pratikunterwegs/historical-landscape-change
Quantifying a century of landscape changes across the Nilgiri hills of the Western Ghats
pratikunterwegs/howto
pratikunterwegs/klepto-move-evol
Source code for an analysis of the co-evolution of movement and competition strategies.
pratikunterwegs/Kleptomove
Source code for the Kleptomove simulation, an individual-based model of the co-evolution of animal movement and competition.
pratikunterwegs/knot-association
Source code for a project on assortative association in migratory Arctic waders.
pratikunterwegs/nilgiris-resurvey-project
Historical resurvey of bird communities across the Nilgiri hills of the Western Ghats
pratikunterwegs/noromod
Compartmental model for norovirus transmission in an age-structured population, with seasonal forcing, written in Rcpp.
pratikunterwegs/owidR
An R Package for Importing Data from Our World in Data
pratikunterwegs/patchoverlap
Methods for fast spatial overlap calculations between animal residence patches.
pratikunterwegs/patho-move-evol
Exploring the evolution of movement rules in the presence of an infectious pathogen.
pratikunterwegs/pratikunterwegs
pratikunterwegs/test-quarto-preview
test-quarto-preview
pratikunterwegs/test-rcppeigen
To test RcppEigen
pratikunterwegs/testclasslinking
Experiments in using more C++ features in Rcpp packages.
pratikunterwegs/vacamole
Deterministic SEIR model with vaccination
pratikunterwegs/winter-kites
Where kites spend the winter