jamesmbaazam
Research Software Engineer, working on the Epiverse Initiative at LSHTM. Mostly work with/in R.
London School of Hygiene and Tropical MedicineUnited Kingdom
Pinned Repositories
EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
epinowcast
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
bpmodels
Methods for simulating and analysing the sizes and lengths of chains from branching process models
epichains
[Under active development] Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models
AbcSmc
Sequential Monte Carlo Approximate Bayesian Computation with Partial Least Squares parameter estimator
awesome-c
A curated list of awesome C frameworks, libraries, resources and other shiny things. Inspired by all the other awesome-... projects out there.
awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
awesome-cpp
A curated list of awesome C++ (or C) frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff.
awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
awesome-python-data-science
Probably the best curated list of data science software in Python.
jamesmbaazam's Repositories
jamesmbaazam/awesome-cpp
A curated list of awesome C++ (or C) frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff.
jamesmbaazam/awesome-rust
A curated list of Rust code and resources.
jamesmbaazam/c-book-club
Modern C book club for R contributors
jamesmbaazam/EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
jamesmbaazam/fitR
Functions for model fitting and inference
jamesmbaazam/incidence2
Compute and visualise incidence (reworking of the original incidence package)
jamesmbaazam/Model-fitting-and-inference-for-infectious-disease-dynamics
Model fitting and inference for infectious disease dynamics
jamesmbaazam/Modern-CPP-Programming
Modern C++ Programming Course (C++11/14/17/20)
jamesmbaazam/orv_modelling_review_epidemics
Mechanistic modelling of outbreak response interventions to human vaccine-preventable diseases: a systematic review of modelling practices before COVID-19
jamesmbaazam/quickfit
Toolbox of model fitting helper functions
jamesmbaazam/ROS-Examples
Regression and other stories R examples
jamesmbaazam/stan-example-models
Example models for Stan
jamesmbaazam/jamesmbaazam
Personal profile
jamesmbaazam/Applications-Epiverse-pipelines
jamesmbaazam/codereviewdemo
jamesmbaazam/epicontacts
Handling, Visualisation and Analysis of Epidemiological Contacts
jamesmbaazam/epidist-paper
jamesmbaazam/epinowcast
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
jamesmbaazam/epiparameterDashboard
A dashboard for visualising the epidemiological parameters stored in the epiparameter package.
jamesmbaazam/epireview
jamesmbaazam/helpful_stan_functions
jamesmbaazam/HETTMO_01
R-package based on Stan to efficiently implement time-dependent transmission and stratification
jamesmbaazam/jamesmbaazam.github.io
Personal website
jamesmbaazam/QuartoPresentationTemplate
My Quarto Presentation Template
jamesmbaazam/r-pharma-2023-tidymodels
R/Pharma 2023 Conference workshop materials.
jamesmbaazam/stat_rethinking_2024
jamesmbaazam/TraceBlogUtils
jamesmbaazam/TransPhylo
Reconstruction of transmission trees using genomic data
jamesmbaazam/validate
Professional data validation for the R environment
jamesmbaazam/verdata
Una herramienta para el uso y análisis de los datos de Conflicto armado en Colombia resultantes del proyecto conjunto JEP-CEV-HRDAG.