jamesmbaazam
Research Software Engineer, working on the Epiverse Initiative at LSHTM. Mostly work with/in R.
London School of Hygiene and Tropical MedicineUnited Kingdom
Pinned Repositories
EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
epinowcast
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
epichains
Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models
AbcSmc
Sequential Monte Carlo Approximate Bayesian Computation with Partial Least Squares parameter estimator
awesome-c
A curated list of awesome C frameworks, libraries, resources and other shiny things. Inspired by all the other awesome-... projects out there.
h5n1_uk_scenario_modelling
intro-to-idd-modelling
Introduction to Infectious Disease Modelling
modeling_infectious_diseases_in_humans_and_animals_r_programs
R code for all the programs in the book "Modeling infectious diseases in humans and animals by Keeling and Rohani
mpox_2024_nowcasting
Estimate reporting delays in the mpox 2024 outbreak data and nowcasting cases
mppr
Materials for the in-person "Modelling for Pandemic Preparedness and Response" Modular Shortcourse
jamesmbaazam's Repositories
jamesmbaazam/h5n1_uk_scenario_modelling
jamesmbaazam/mpox_2024_nowcasting
Estimate reporting delays in the mpox 2024 outbreak data and nowcasting cases
jamesmbaazam/modeling_infectious_diseases_in_humans_and_animals_r_programs
R code for all the programs in the book "Modeling infectious diseases in humans and animals by Keeling and Rohani
jamesmbaazam/awesome-rust
A curated list of Rust code and resources.
jamesmbaazam/Modern-CPP-Programming
Modern C++ Programming Course (C++11/14/17/20)
jamesmbaazam/now-fore-cast
jamesmbaazam/orv_modelling_review_epidemics
Mechanistic modelling of outbreak response interventions to human vaccine-preventable diseases: a systematic review of modelling practices before COVID-19
jamesmbaazam/ROS-Examples
Regression and other stories R examples
jamesmbaazam/stan-example-models
Example models for Stan
jamesmbaazam/intro-to-idd-modelling
Introduction to Infectious Disease Modelling
jamesmbaazam/jamesmbaazam
Personal profile
jamesmbaazam/mppr
Materials for the in-person "Modelling for Pandemic Preparedness and Response" Modular Shortcourse
jamesmbaazam/codereviewdemo
jamesmbaazam/collaboratory-epiparameter-community
jamesmbaazam/epidist-paper
jamesmbaazam/epinowcast
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
jamesmbaazam/epiparameterDashboard
A dashboard for visualising the epidemiological parameters stored in the epiparameter package.
jamesmbaazam/epireview
jamesmbaazam/jamesmbaazam.github.io
Personal website
jamesmbaazam/learning_practice
Notebooks, code, and notes from learning various concepts
jamesmbaazam/nfidd
Course on nowcasting and forecasting of infectious disease dynamcis
jamesmbaazam/PrimaryCensored.jl
Primary censoring extension for Distributions.jl
jamesmbaazam/QuartoPresentationTemplate
My Quarto Presentation Template
jamesmbaazam/r-pharma-2023-tidymodels
R/Pharma 2023 Conference workshop materials.
jamesmbaazam/sir-julia
Various implementations of the classical SIR model in Julia
jamesmbaazam/stancon2024_infectious_diseases
jamesmbaazam/stat_rethinking_2024
jamesmbaazam/TraceBlogUtils
jamesmbaazam/ueifid
Understanding, evaluating, and improving forecasts of infectious disease burden
jamesmbaazam/verdata
Una herramienta para el uso y análisis de los datos de Conflicto armado en Colombia resultantes del proyecto conjunto JEP-CEV-HRDAG.