epiforecasts/EpiNow2

Issues

• Missing square in spectral densities

  #837 opened a month ago by sbfnk
  0

• definition of alpha in GP spectral densities

  #829 opened a month ago by sbfnk
  3

• spectral densities of Matern Kernels of order != 3/2

  #828 opened a month ago by sbfnk
  2

• Optimised Matern kernels

  #760 opened a month ago by seabbs
  0

• Fix NEWS.md

  #832 opened a month ago by jamesmbaazam
  0

• sd of prior of alpha

  #834 opened a month ago by sbfnk
  0

• Add message explaining new behaviour when `obs_opts(na = "missing")`

  #771 opened a month ago by jamesmbaazam
  1

• Hot fix to remove sentence in vignette about 0 indexing of GI warning

  #824 opened a month ago by kaitejohnson
  0

• `R CMD check` failing on `main`

  #826 opened a month ago by jamesmbaazam
  0

• Add vignette on modelling temporally aggregated data (i.e., `obs_opts(na = "accumulate")` )

  #772 opened 2 months ago by jamesmbaazam
  8

• split out distribution interface

  #823 opened 2 months ago by sbfnk
  4

• update-citation action is missing libcurl4-openssl-dev

  #770 opened 2 months ago by sbfnk
  1

• Add a warning when the length of delays are longer than the supplied data

  #739 opened 4 months ago by seabbs
  2

• Hex logo

  #791 opened 2 months ago by sbfnk
  13

• `pathfinder` fails for large case reports

  #728 opened 2 months ago by jamesmbaazam
  5

• Release EpiNow2 1.6.0

  #790 opened 2 months ago by sbfnk
  1

• CRAN v1.6.0 submission comments

  #815 opened 2 months ago by sbfnk
  0

• Add support for time-varying ascertainment

  #792 opened 2 months ago by seabbs
  5

• getting started vignette not showing up on pkgdown site

  #814 opened 2 months ago by sbfnk
  0

• Improve documentation for those passing in a GI

  #793 opened 2 months ago by kaitejohnson
  1

• Error if first element of a `NonParametric` generation interval PMF is non-zero

  #806 opened 2 months ago by sbfnk
  2

• Dependencies

  #796 opened 2 months ago by sbfnk
  2

• `check_sparse_pmf_tail` fails if `span` (default 5) is >= `length(pmf`

  #801 opened 2 months ago by sbfnk
  0

• Add plots of distributions in workflow vignette

  #778 opened 2 months ago by jamesmbaazam
  0

• Improve discretise

  #776 opened 2 months ago by seabbs
  2

• Add colours to `dist_spec` plot

  #786 opened 2 months ago by sbfnk
  1

• Document/surface what settings are applied when `rt = NULL`.

  #761 opened 2 months ago by jamesmbaazam
  2

• Order looks wrong in distribution plot

  #783 opened 2 months ago by sbfnk
  1

• rename `fix_dist`

  #715 opened 2 months ago by sbfnk
  0

• `bootstrapped_dist_fit` example produces warnings about too many samples

  #725 opened 2 months ago by sbfnk
  0

• rename `tolerance`

  #714 opened 2 months ago by sbfnk
  0

• Improve internal handling of PMFs in stan

  #777 opened 2 months ago by seabbs
  1

• Weekly random walk estimator no longer working as expected

  #767 opened 2 months ago by martinamcm
  11

• Growth rate estimators

  #768 opened 2 months ago by adrian-lison
  0

• Locally stationary GPs

  #765 opened 3 months ago by seabbs
  1

• Vectorise GPs

  #757 opened 3 months ago by seabbs
  5

• ARMA spectral density

  #759 opened 3 months ago by seabbs
  1

• Initialise models with approximate algorithms

  #756 opened 3 months ago by jamesmbaazam
  0

• NonParametric distributions fail `check_stan_delays()` run

  #749 opened 3 months ago by jamesmbaazam
  0

• Add a warning when PMFs are very sparse in the tails

  #738 opened 3 months ago by seabbs
  0

• Overflow issues with `neg_binomial_2_rng` in variational bayes method

  #727 opened 3 months ago by jamesmbaazam
  3

• Add actions to precompile long running vignettes

  #732 opened 3 months ago by jamesmbaazam
  5

• Truncation adjustment does not work as expected if truncation vector is too long

  #735 opened 4 months ago by kgostic
  5

• Document all stan code

  #740 opened 4 months ago by jamesmbaazam
  1

• Change Getting started documentation to point users to faster models

  #730 opened 4 months ago by jamesmbaazam
  5

• Considerations for the responsible use of GitHub Actions

  #726 opened 4 months ago by jamesmbaazam
  10

• Vignette on `estimate_infections()` examples has errors in code chunks

  #719 opened 4 months ago by jamesmbaazam
  2

• Test coverage action is very slow

  #721 opened 4 months ago by sbfnk
  0

• `forecast_infections()` errors with `estimates` from `epinow()` run

  #718 opened 4 months ago by jamesmbaazam
  1

• non-continuity between the estimated and forecast growth rate credible intervals

  #710 opened 5 months ago by avallecam
  6