pdb-database
There are 20 repositories under pdb-database topic.
Biswa96/PDBDownloader
Standalone program to download PDB Symbol files for debugging without WDK
gu1729/pdbdump
Dump content of PDB files (program databases) in JSON, XML, SQLite3, CSV etc.
gph82/mdciao
mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
johnnytam100/pdb2uniprot
A Python script to map PDB ID + chain ID to UniProt ID.
Utilon/MutaPipe_Repo
A bioinformatics pipeline to identify the best available PDB structures for all available variants for specified genes of interest
project-gemmi/mmcif-benchmark
Benchmarks for reading and interpreting mmCIF files
Spenhouet/PDBViewer
Visualization of proteins directly from the PDB database or from a .pdb file.
lucaspalmeira/bioinfo
Guia de programas e ferramentas de bioinformática e química computacional
MooersLab/ACA2022
Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
multimeric/mmcifix
Fixes mmCIF protein structure files
QDcvd/DNA-Sequence-alignment
基于modeller官网脚本进行开发的序列比对脚本
QDcvd/Tripeptide-single-amino-acid-database-generator
A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete
guzikine/pdb-archive-filter
This script enables users to filter through PDB archive in order to obtain simple data from each file.
YSChen0609/PDB-Protein-Analysis
Modules for PDB Data parsing and Ramachandran Analysis.
Guillawme/insights-from-the-pdb
Various statistics on the Protein Data Bank
julianspaeth/pdb-viewer
A PDB Viewer Application implemented completely in JavaFX
ravila4/Pharos-to-PDB
Mapping Pharos Targets to PDB IDs
Tejas1415/PDB-Protein-Structure-Prediction
A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.
UWSEDS-aut17/OPMxplore
uwseds-group-OPMxplore created by GitHub Classroom