pdb-parser

There are 27 repositories under pdb-parser topic.

  • PDBRipper

    horsicq/PDBRipper

    PDBRipper is a utility for extract an information from PDB-files.

    Language:C856262394

  • HoShiMin/formatPE

    A bunch of parsers for PE and PDB formats in C++

    Language:C++25781052

  • zouxianyu/query-pdb

    query-pdb is a server-side software for parsing PDB files. The software provides PDB online parsing service.

    Language:C++1604647

  • douweschulte/pdbtbx

    A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.

    Language:Rust6438520
  • PACKMAN

    Pranavkhade/PACKMAN

    Python package built around protein structure and dynamics. OpenBabel-inspired objects.

    Language:Python364177

  • a-r-j/CPDB

    Cython implementation of PDB -> DataFrame parsing

    Language:Cython33210

  • smx-smx/PDBSharp

    Fast and cross-platform parser for Microsoft PDB files

    Language:C#32644

  • BioHaskell/hPDB

    PDB parser in Haskell

    Language:Haskell21347
  • MolDF

    Ruibin-Liu/MolDF

    Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.

    Language:Python10292

  • richard-hgs/c-infinity-utilities

    C++ Utilities, DLL for GUI, Layout Managers, PDB Symbol Parser, Input(Mouse double click in less than 100ms fix), Raw disk data writer, And much more.

    Language:C8101

  • LixiangZhao98/ProteinVisualization

    This is a Protein Visualization demo project built with Unity3D. It reads and visualizes .pdb files. The current visualizations includes space-filling, balls-and-sticks, licorice and backbone diagrams, and...the seamless transition between these diagrams. The repository is keeping to update.

    Language:C#6201

  • OmerRaviv/PdbBenchmarks

    Benchmark for the most popular managed PDB readers.

    Language:C#6100

  • smx-smx/kaitai-pdb

    Universal parser for Microsoft PDB files

    Language:Kaitai Struct420

  • Krnds/ProjetPDB

    Java command line tool for fetching, parsing and displaying in a Jmol window all interactions zones between proteins or molecular complexes

    Language:Java2100

  • allbegray/pdb-parser-js

    Utility to parse PDB(Protein Data Bank) file format 3.3 into JSON format

    Language:TypeScript1200

  • hamalcij/biotool

    Bioinformatics Toolbox

    Language:C++1100

  • holdyounger/EnumPDB

    Enum And Query Windows PE File's Function

    Language:Go1100

  • Jaffar-Hussein/Python-PDB-Parser-and-Analysis

    A Python-based parser and analysis tool for Protein Data Bank (PDB) files. The project aims to facilitate the manipulation of PDB files, enabling users to extract and compute various structural properties of proteins, such as counting amino acid residues and calculating distances between atoms.

    Language:Python1100

  • Michal-Szczygiel/pdb_parser

    Prosty parser plików .pdb napisany jako natywne rozszerzenie pythonowe.

    Language:Rust1100

  • Michal-Szczygiel/pdb_utility

    Użyteczności związane z parsowaniem plików .pdb oraz zdalnym dostępem do baz danych Pfam i UniProt.

    Language:Python1100

  • Tejas1415/PDB-Protein-Structure-Prediction

    A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.

    Language:Python1101

  • zwang123/pdblib

    A simple Python library to easily parse pdb files

    Language:Python1100

  • AndreaRubbi/pdb_parser

    Python program that can identify the residues interacting between chains of a complex protein.

    Language:Python0100

  • c-feldmann/pdbpython

    The scope of this module is downloading or reading PDB-Files and subsequently parsing them

    Language:Python0100

  • oleander-twig/protein-databank-filtering

    My summer practice at the HSE university

    Language:Jupyter Notebook0100

  • Baromir19/DumpPDB

    Console application for displaying debug symbols from .pdb

    Language:C++

  • connyyu/list_proteins

    List the protein chains and ligands in structural file(s). #Haku

    Language:Python