peak-calling
There are 19 repositories under peak-calling topic.
nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
nf-core/clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
odb9402/CNNPeaks
The ChIP-Seq peak calling algorithm using convolution neural networks
HuntsmanCancerInstitute/MultiRepMacsChIPSeq
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
nanxstats/oneclust
🥇 Maximum homogeneity clustering for one-dimensional data
OpenOmics/chrom-seek
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
RenneLab/CnR-flow
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
skchronicles/PeakCalling
Benchmarking ChIP-seq peak callers
JetBrains-Research/chipseq-smk-pipeline
ChIP-Seq processing pipeline on snakemake
OpenOmics/cfChIP-seek
cell-free ChIP-seq pipeline
deeprob/biopeaker
Peak classification with Deep Learning
jawa23bio/ATAC-Seq
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
dansta0804/TF_analysis
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
JetBrains-Research/washu
Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
petrokvitka/Footprints_extraction
A small script to find peaks from the .bigWig file and output them in a .bed file.
stjude-biohackathon/peakPeekeR
Peak calling optimization via real time results assessment and interactive parameter adjustment.
AntoinePassemiers/ChIP-seq-Peak-Caller
Peak Calling algorithm for Chromatin-immunoprecipitation sequencing (ChIP-seq) data
meekrob/spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
neurogenomics/PeakyFinders
R package for mining, calling, and importing epigenomic peaks.