plasmids
There are 26 repositories under plasmids topic.
bebop/poly
A Go package for engineering organisms.
oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
phac-nml/mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
oschwengers/platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
smaegol/PlasFlow
Software for prediction of plasmid sequences in metagenomic assemblies
pianpianyouche/plascad
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
yachielab/QUEEN
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
Koeng101/dnadesign
A Go package for designing DNA.
tiagofilipe12/pATLAS
Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:
oschwengers/tadrep
Targeted Detection and Reconstruction of Plasmids
Lattice-Automation/synbio
a DNA assembly library
althonos/moclo
Modular cloning simulation with the MoClo framework in Python
haradama/PlasmidPicker
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
haradama/pHash
Software to identify known plasmid sequence from metagenomic assembly using Minhash
jjti/repp
repository-based plasmid design
lisavader/plasmidEC
An ensemble of plasmid classification tools
NorwegianVeterinaryInstitute/Ellipsis
Plasmid assembly, gene identification and annotation pipeline
th0mr/plasmidcanvas
A simple python plasmid map creator
BCCDC-PHL/plasmid-screen
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
moltinginstar/addgene-api
An unofficial API for Addgene, the open-source plasmid repository.
photocyte/auto_clone
A Python based server for making Gibson cloning a little faster
the-alquemist/GMI-PAN
Bacterial plasmid annotation pipeline
tiagofilipe12/PlasmidCoverage
Script to obtain plasmid id from WGS data using bowtie2 to map
MetabolicEngineeringGroupCBMA/YeastPathwayKit
Yeast pathway kit promoter and terminator vectors and other related public information. Do not put secret information here.
BBQuercus/master-thesis
Master thesis in molecular biology at the University of Basel.
ssi-dk/BPS_FBI_scripts_Clostyper
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.