NorwegianVeterinaryInstitute/Ellipsis

Issues

• INFO: Started rewritting for DSL2 (and reason)

  #24 opened 5 months ago
  0

• Remove assembly from pipeline

  #22 opened 10 months ago
  0

• Switch from run-script to standard nextflow execution

  #21 opened 10 months ago
  0

• Upgrade to images

  #20 opened 10 months ago
  0

• Issue with element_report

  #19 opened 3 years ago
  0

• Control for missing reports

  #18 opened 3 years ago
  1

• params.prokka_additional=""

  #17 opened 4 years ago
  0

• param.quast

  #16 opened 4 years ago
  0

• May I suggest ...

  #15 opened 4 years ago
  0

• Check the collate script, chromosome is included in the element report even when include_chrom=false

  #14 opened 4 years ago
  1

• Add Kraken classification of reads/contigs

  #13 opened 4 years ago
  0

• Wrong output from pipeline

  #12 opened 4 years ago
  0

• Add MLST

  #11 opened 4 years ago
  1

• Rewrite pipeline to match the new output from Mob-Suite version 3.0.1

  #10 opened 4 years ago
  0

• Add circularity status and completeness to reports

  #9 opened 4 years ago
  0

• Make trimming of long and short reads before hybrid assembly optional

  #8 opened 4 years ago
  1

• Fix quast results in summary report

  #7 opened 4 years ago
  1

• Add hybrid assembly step

  #6 opened 4 years ago
  3

• Move to docker/singularity from conda

  #5 opened 4 years ago
  0

• Add option for complete assemblies

  #4 opened 4 years ago
  2

• Add more info to readme

  #3 opened 4 years ago
  0

• Add quast report to own input assemblies

  #2 opened 4 years ago
  1

• Add possibility of using own assemblies in addition to ARIBA

  #1 opened 4 years ago
  1